ID

38327

Description

With permission from the DZHK administrative office. http://dzhk.de The DZHK (Deutsches Zentrum für Herz-Kreislauf-Forschung e.V.; German Center for Cardiovascular Research) is a joint cooperation of twenty-eight institutions in seven locations throughout Germany to develop a common research strategy. They developed a data catalogue with metadata and data as well as information about available biological materials from all their studies. For more information on the data catalogue and access to actual data and biosamples please visit https://dzhk.de/en/resources/data-manual/ . This version contains the metadata part only. The form Biobanking Basic Set is used to document the quality of samples of the Basic Set. The Basic Set consists of EDTA plasma, serum, citrate plasma, buffy coat and urine. The documentation is to be performed according to the DZHK's Biobanking SOPs, which can be accessed at https://dzhk.de/en/resources/sops/ (or https://dzhk.de/ressourcen/sops/ for the German language versions). The SOPs for this form are "Collection of Biomaterials from Blood and Urine" (version 1.1, valid as of 15/12/2014) and "Biomaterial Processing Basic Set" (version 1.1, valid as of 15/12/2014) for the English language versions, and "Gewinnung von Biomaterialien aus Blut und Urin" (version 1.1, valid as of 15/12/2014) and "Biomaterialverarbeitung Basis-Set" (versin 1.1, valid as of 15/12/2014) for the German language version. The collection of biomaterials is carried out in accordance with local regulations. Deviations from the following requirements will not result in the exclusion of the patient/test subject from the study. Collection of blood: Appropriate means of disposal for needles, swabs, etc. Period of rest in unaltered body position prior to blood collection: 5 minutes. Site of collection on patient/test subject: cubital vein. Tourniquet time < 1 minute. Specimens should be drawn in the following order: serum, citrate, EDTA. The tourniquet should be released once collection of blood has begun, i.e. when blood flow into the primary receptacle is visible. No repeat clenching of the fist. Invert immediately while exchanging the primary receptacles. Store the primary receptacles vertically in the primary receptacle/tube rack. Collection of urine: Label the urine cup using the sticker intended for that purpose. Inform the patient/test subject using the information sheet “Collecting a Mid-Stream UrineSpecimen”. Spontaneous urine collection. Immediately after urine specimen is given: document the time the urine specimen was collected and the appearance of the urine on the Biomaterial Collection Form. If patient/test subject is actively menstruating: Make a note of this on the Biomaterial Collection Form.

Link

http://dzhk.de

Keywords

Versions (2)
  1. 10/7/19 10/7/19 -
  2. 10/10/19 10/10/19 - Sarah Riepenhausen
Copyright Holder

DZHK

Uploaded on

October 10, 2019

DOI

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License

Creative Commons BY-NC 3.0
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DZHK Data Catalogue

German English

Biobanking Basic Set

1 forms  
  1. StudyEvent: ODM
    1. Biobanking Basic Set
Number of filled aliquot tubes
Description

Number of filled aliquot tubes

Alias
UMLS CUI-1
C1510844
UMLS CUI-2
C1561954
UMLS CUI-3
C0750480
Serum
Description

Number of filled serum tubes [300µl] Should be: 10

Data type

integer

Alias
UMLS CUI [1,1]
C0750480
UMLS CUI [1,2]
C1292516
EDTA plasma
Description

Number of filled EDTA tubes [300µl] Should be: 10

Data type

integer

Alias
UMLS CUI [1,1]
C0750480
UMLS CUI [1,2]
C3872626
Citrate plasma
Description

Number of filled Citrate tubes [300µl] Should be: 4

Data type

integer

Alias
UMLS CUI [1,1]
C0750480
UMLS CUI [1,2]
C3872791
Urine
Description

Number of filled Urine tubes [300µl] Should be: 8

Data type

integer

Alias
UMLS CUI [1,1]
C0750480
UMLS CUI [1,2]
C0489902
Buffy coat
Description

Number of filled Buffy Coat tubes [< 300µl] Should be: 2

Data type

integer

Alias
UMLS CUI [1,1]
C0750480
UMLS CUI [1,2]
C1561954
UMLS CUI [1,3]
C2936475
Blood and Urine collection
Description

Blood and Urine collection

Alias
UMLS CUI-1
C0005834
UMLS CUI-2
C0200354
Blood collection
Description

Blood collected

Data type

text

Alias
UMLS CUI [1,1]
C0005834
UMLS CUI [1,2]
C0449416
Position during blood collection
Description

Position during blood collection

Data type

text

Alias
UMLS CUI [1,1]
C0005834
UMLS CUI [1,2]
C1262869
Duration of position prior to blood collection
Description

How long was the patient/subject in this position prior to blood collection? in min

Data type

integer

Measurement units
  • min
Alias
UMLS CUI [1,1]
C0449238
UMLS CUI [1,2]
C1262869
UMLS CUI [1,3]
C0332152
UMLS CUI [1,4]
C0005834
min
Duration of position prior to blood collection
Description

Duration of position prior to blood collection

Data type

boolean

Alias
UMLS CUI [1,1]
C0449238
UMLS CUI [1,2]
C1262869
UMLS CUI [1,3]
C0332152
UMLS CUI [1,4]
C0005834
Time interval since last food intake
Description

Time interval since last food intake

Data type

text

Alias
UMLS CUI [1,1]
C0449238
UMLS CUI [1,2]
C0687676
UMLS CUI [1,3]
C0578574
Time interval since last food intake
Description

Total number of hours, if known

Data type

integer

Measurement units
  • hours
Alias
UMLS CUI [1,1]
C0449238
UMLS CUI [1,2]
C0687676
UMLS CUI [1,3]
C0578574
hours
Parenteral nutrition
Description

Parenteral nutrition

Data type

text

Alias
UMLS CUI [1]
C0030547
Menstruating at time of urine collection
Description

For women: Menstruating at time of urine collection

Data type

text

Alias
UMLS CUI [1,1]
C0025344
UMLS CUI [1,2]
C0347984
UMLS CUI [1,3]
C0200354
Process steps
Description

Process steps

Alias
UMLS CUI-1
C0022885
UMLS CUI-2
C1261552
Time of blood collection
Description

Date/Time of blood collection

Data type

datetime

Alias
UMLS CUI [1,1]
C0005834
UMLS CUI [1,2]
C1264639
Time of urine collection
Description

Time of urine collection(clinic).

Data type

datetime

Alias
UMLS CUI [1,1]
C1264639
UMLS CUI [1,2]
C0200354
Time of receipt at the laboratory
Description

The primary receptacles along with the Biomaterial Collection Form and the aliquot tubes (rack) should be transported to the laboratory, if possible, within 60 minutes after collection of the biomaterial.

Data type

datetime

Alias
UMLS CUI [1,1]
C1264639
UMLS CUI [1,2]
C3873589
Time of receipt at the laboratory (urine)
Description

Only if time of receipt of urine differs from blood, complete for urine

Data type

datetime

Alias
UMLS CUI [1,1]
C1264639
UMLS CUI [1,2]
C3873589
UMLS CUI [1,3]
C1610733
End of centrifugation
Description

Centrifuge the primary receptacles at 2,000 g for 10 minutes OR 3,000 g for 5 minutes; refrigerated centrifuges: set temperature to 18°C; non-refrigerated centrifuges: allow centrifuge to cool down after each run. End of centrifugation; date, if different from time of receipt at the laboratory, otherwise, Timestamp with hour and minute

Data type

partialDatetime

Alias
UMLS CUI [1,1]
C3899266
UMLS CUI [1,2]
C0200364
End of centrifugation (urine)
Description

If time of receipt of urine differs from blood, please complete for urine: Timestamp with hour and minute

Data type

partialDatetime

Alias
UMLS CUI [1,1]
C3899266
UMLS CUI [1,2]
C0200364
UMLS CUI [1,3]
C1610733
Time of freezing of all aliquots
Description

Time of freezing of all aliquots at -80°C or lower (Serum, EDTA plasma, Citrate plasma, Urine, Buffy Coat).

Data type

datetime

Alias
UMLS CUI [1,1]
C1264639
UMLS CUI [1,2]
C0200367
Sample properties (blood)
Description

Sample properties (blood)

Alias
UMLS CUI-1
C0178913
UMLS CUI-2
C0871161
Normal
Description

Is the sample normal?

Data type

text

Alias
UMLS CUI [1,1]
C0178913
UMLS CUI [1,2]
C0205307
Lipaemic
Description

Is the sample lipaemic?

Data type

text

Alias
UMLS CUI [1,1]
C0178913
UMLS CUI [1,2]
C0460077
Icteric
Description

Is the sample icteric?

Data type

text

Alias
UMLS CUI [1,1]
C0178913
UMLS CUI [1,2]
C0460078
Haemolytic
Description

Is the sample haemolytic?

Data type

text

Alias
UMLS CUI [1,1]
C0178913
UMLS CUI [1,2]
C0312853
Sample properties (urine)
Description

Sample properties (urine)

Alias
UMLS CUI-1
C0871161
UMLS CUI-2
C1610733
Normal
Description

Is the sample normal?

Data type

text

Alias
UMLS CUI [1,1]
C1610733
UMLS CUI [1,2]
C0205307
Cloudy
Description

Is the sample cloudy?

Data type

text

Alias
UMLS CUI [1,1]
C1610733
UMLS CUI [1,2]
C0278034
Bloody
Description

Is the sample bloody?

Data type

text

Alias
UMLS CUI [1,1]
C1610733
UMLS CUI [1,2]
C0333275
Commentaries
Description

Commentaries

Alias
UMLS CUI-1
C0947611
Commentaries (general)
Description

Comments (general)

Data type

text

Alias
UMLS CUI [1]
C0947611
Commentaries (aliquots)
Description

Comments (aliquots)

Data type

text

Alias
UMLS CUI [1,1]
C1510844
UMLS CUI [1,2]
C0947611
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Similar models

Biobanking Basic Set

1 forms
  1. StudyEvent: ODM
    1. Biobanking Basic Set
Name
Type
Description | Question | Decode (Coded Value)
Data type
Alias
Item Group
Number of filled aliquot tubes
C1510844 (UMLS CUI-1)
C1561954 (UMLS CUI-2)
C0750480 (UMLS CUI-3)
Number of serum tubes
Item
Serum
integer
C0750480 (UMLS CUI [1,1])
C1292516 (UMLS CUI [1,2])
Number of EDTA plasma tubes
Item
EDTA plasma
integer
C0750480 (UMLS CUI [1,1])
C3872626 (UMLS CUI [1,2])
Number of citrate tubes
Item
Citrate plasma
integer
C0750480 (UMLS CUI [1,1])
C3872791 (UMLS CUI [1,2])
Number of urine tubes
Item
Urine
integer
C0750480 (UMLS CUI [1,1])
C0489902 (UMLS CUI [1,2])
Number of buffy coat tubes
Item
Buffy coat
integer
C0750480 (UMLS CUI [1,1])
C1561954 (UMLS CUI [1,2])
C2936475 (UMLS CUI [1,3])
Item Group
Blood and Urine collection
C0005834 (UMLS CUI-1)
C0200354 (UMLS CUI-2)
Item
Blood collection
text
C0005834 (UMLS CUI [1,1])
C0449416 (UMLS CUI [1,2])
Blood source
Code List
Blood collection
CL Item
venous (venous)
CL Item
arterial (arterial)
CL Item
unknown (unknown)
CL Item
not assessed (not assessed)
Item
Position during blood collection
text
C0005834 (UMLS CUI [1,1])
C1262869 (UMLS CUI [1,2])
Position during blood collection
Code List
Position during blood collection
CL Item
sitting (sitting)
CL Item
lying (lying)
CL Item
unkown (unkown)
CL Item
not assessed (not assessed)
Duration of position prior to blood collection
Item
Duration of position prior to blood collection
integer
C0449238 (UMLS CUI [1,1])
C1262869 (UMLS CUI [1,2])
C0332152 (UMLS CUI [1,3])
C0005834 (UMLS CUI [1,4])
Duration of position prior to blood collection
Item
Duration of position prior to blood collection
boolean
C0449238 (UMLS CUI [1,1])
C1262869 (UMLS CUI [1,2])
C0332152 (UMLS CUI [1,3])
C0005834 (UMLS CUI [1,4])
Item
Time interval since last food intake
text
C0449238 (UMLS CUI [1,1])
C0687676 (UMLS CUI [1,2])
C0578574 (UMLS CUI [1,3])
Time since last food intake
Code List
Time interval since last food intake
CL Item
< 8 h (< 8 h)
CL Item
unkown (unkown)
CL Item
not assessed (not assessed)
CL Item
 (≥ 8 h)
Hours since last food intake
Item
Time interval since last food intake
integer
C0449238 (UMLS CUI [1,1])
C0687676 (UMLS CUI [1,2])
C0578574 (UMLS CUI [1,3])
Item
Parenteral nutrition
text
C0030547 (UMLS CUI [1])
Parenteral nutrition
Code List
Parenteral nutrition
CL Item
yes (yes)
CL Item
no (no)
CL Item
unknown (unknown)
CL Item
not assessed (not assessed)
Item
Menstruating at time of urine collection
text
C0025344 (UMLS CUI [1,1])
C0347984 (UMLS CUI [1,2])
C0200354 (UMLS CUI [1,3])
Parenteral nutrition
Code List
Menstruating at time of urine collection
CL Item
yes (yes)
CL Item
no (no)
CL Item
unknown (unknown)
CL Item
not assessed (not assessed)
Item Group
Process steps
C0022885 (UMLS CUI-1)
C1261552 (UMLS CUI-2)
Date/Time of blood collection
Item
Time of blood collection
datetime
C0005834 (UMLS CUI [1,1])
C1264639 (UMLS CUI [1,2])
Date/Time of urine collection
Item
Time of urine collection
datetime
C1264639 (UMLS CUI [1,1])
C0200354 (UMLS CUI [1,2])
Date/Time of receipt at laboratory
Item
Time of receipt at the laboratory
datetime
C1264639 (UMLS CUI [1,1])
C3873589 (UMLS CUI [1,2])
Date/Time of urine receipt at the laboratory
Item
Time of receipt at the laboratory (urine)
datetime
C1264639 (UMLS CUI [1,1])
C3873589 (UMLS CUI [1,2])
C1610733 (UMLS CUI [1,3])
End Date/Time of centrifugation
Item
End of centrifugation
partialDatetime
C3899266 (UMLS CUI [1,1])
C0200364 (UMLS CUI [1,2])
End Date/Time of urine centrifugation
Item
End of centrifugation (urine)
partialDatetime
C3899266 (UMLS CUI [1,1])
C0200364 (UMLS CUI [1,2])
C1610733 (UMLS CUI [1,3])
Date/Time freezing all aliquots
Item
Time of freezing of all aliquots
datetime
C1264639 (UMLS CUI [1,1])
C0200367 (UMLS CUI [1,2])
Item Group
Sample properties (blood)
C0178913 (UMLS CUI-1)
C0871161 (UMLS CUI-2)
Item
Normal
text
C0178913 (UMLS CUI [1,1])
C0205307 (UMLS CUI [1,2])
Parenteral nutrition
Code List
Normal
CL Item
yes (yes)
CL Item
no (no)
CL Item
unknown (unknown)
CL Item
not assessed (not assessed)
Item
Lipaemic
text
C0178913 (UMLS CUI [1,1])
C0460077 (UMLS CUI [1,2])
Parenteral nutrition
Code List
Lipaemic
CL Item
yes (yes)
CL Item
no (no)
CL Item
unknown (unknown)
CL Item
not assessed (not assessed)
Item
Icteric
text
C0178913 (UMLS CUI [1,1])
C0460078 (UMLS CUI [1,2])
Parenteral nutrition
Code List
Icteric
CL Item
yes (yes)
CL Item
no (no)
CL Item
unknown (unknown)
CL Item
not assessed (not assessed)
Item
Haemolytic
text
C0178913 (UMLS CUI [1,1])
C0312853 (UMLS CUI [1,2])
Parenteral nutrition
Code List
Haemolytic
CL Item
yes (yes)
CL Item
no (no)
CL Item
unknown (unknown)
CL Item
not assessed (not assessed)
Item Group
Sample properties (urine)
C0871161 (UMLS CUI-1)
C1610733 (UMLS CUI-2)
Item
Normal
text
C1610733 (UMLS CUI [1,1])
C0205307 (UMLS CUI [1,2])
Parenteral nutrition
Code List
Normal
CL Item
yes (yes)
CL Item
no (no)
CL Item
unknown (unknown)
CL Item
not assessed (not assessed)
Item
Cloudy
text
C1610733 (UMLS CUI [1,1])
C0278034 (UMLS CUI [1,2])
Parenteral nutrition
Code List
Cloudy
CL Item
yes (yes)
CL Item
no (no)
CL Item
unknown (unknown)
CL Item
not assessed (not assessed)
Item
Bloody
text
C1610733 (UMLS CUI [1,1])
C0333275 (UMLS CUI [1,2])
Parenteral nutrition
Code List
Bloody
CL Item
yes (yes)
CL Item
no (no)
CL Item
unknown (unknown)
CL Item
not assessed (not assessed)
Item Group
Commentaries
C0947611 (UMLS CUI-1)
Comments (general)
Item
Commentaries (general)
text
C0947611 (UMLS CUI [1])
Comments (aliquots)
Item
Commentaries (aliquots)
text
C1510844 (UMLS CUI [1,1])
C0947611 (UMLS CUI [1,2])
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