ID

38327

Description

With permission from the DZHK administrative office. http://dzhk.de The DZHK (Deutsches Zentrum für Herz-Kreislauf-Forschung e.V.; German Center for Cardiovascular Research) is a joint cooperation of twenty-eight institutions in seven locations throughout Germany to develop a common research strategy. They developed a data catalogue with metadata and data as well as information about available biological materials from all their studies. For more information on the data catalogue and access to actual data and biosamples please visit https://dzhk.de/en/resources/data-manual/ . This version contains the metadata part only. The form Biobanking Basic Set is used to document the quality of samples of the Basic Set. The Basic Set consists of EDTA plasma, serum, citrate plasma, buffy coat and urine. The documentation is to be performed according to the DZHK's Biobanking SOPs, which can be accessed at https://dzhk.de/en/resources/sops/ (or https://dzhk.de/ressourcen/sops/ for the German language versions). The SOPs for this form are "Collection of Biomaterials from Blood and Urine" (version 1.1, valid as of 15/12/2014) and "Biomaterial Processing Basic Set" (version 1.1, valid as of 15/12/2014) for the English language versions, and "Gewinnung von Biomaterialien aus Blut und Urin" (version 1.1, valid as of 15/12/2014) and "Biomaterialverarbeitung Basis-Set" (versin 1.1, valid as of 15/12/2014) for the German language version. The collection of biomaterials is carried out in accordance with local regulations. Deviations from the following requirements will not result in the exclusion of the patient/test subject from the study. Collection of blood: Appropriate means of disposal for needles, swabs, etc. Period of rest in unaltered body position prior to blood collection: 5 minutes. Site of collection on patient/test subject: cubital vein. Tourniquet time < 1 minute. Specimens should be drawn in the following order: serum, citrate, EDTA. The tourniquet should be released once collection of blood has begun, i.e. when blood flow into the primary receptacle is visible. No repeat clenching of the fist. Invert immediately while exchanging the primary receptacles. Store the primary receptacles vertically in the primary receptacle/tube rack. Collection of urine: Label the urine cup using the sticker intended for that purpose. Inform the patient/test subject using the information sheet “Collecting a Mid-Stream UrineSpecimen”. Spontaneous urine collection. Immediately after urine specimen is given: document the time the urine specimen was collected and the appearance of the urine on the Biomaterial Collection Form. If patient/test subject is actively menstruating: Make a note of this on the Biomaterial Collection Form.

Link

http://dzhk.de

Keywords

  1. 10/7/19 10/7/19 -
  2. 10/10/19 10/10/19 - Sarah Riepenhausen
Copyright Holder

DZHK

Uploaded on

October 10, 2019

DOI

To request one please log in.

License

Creative Commons BY-NC 3.0

Model comments :

You can comment on the data model here. Via the speech bubbles at the itemgroups and items you can add comments to those specificially.

Itemgroup comments for :

Item comments for :

In order to download data models you must be logged in. Please log in or register for free.

DZHK Data Catalogue

Biobanking Basic Set

  1. StudyEvent: ODM
    1. Biobanking Basic Set
Anzahl gefüllter Aliquot-Gefäße
Description

Anzahl gefüllter Aliquot-Gefäße

Alias
UMLS CUI-1
C1510844
UMLS CUI-2
C1561954
UMLS CUI-3
C0750480
Serum
Description

Anzahl gefüllter Serum-Gefäße [300µl]. Soll: 10

Data type

integer

Alias
UMLS CUI [1,1]
C0750480
UMLS CUI [1,2]
C1292516
EDTA-Plasma
Description

Anzahl gefüllter EDTA-Gefäße [300µl]. Soll: 10

Data type

integer

Alias
UMLS CUI [1,1]
C0750480
UMLS CUI [1,2]
C3872626
Citrat-Plasma
Description

Anzahl gefüllter Citrat-Gefäße [300µl]. Soll: 4

Data type

integer

Alias
UMLS CUI [1,1]
C0750480
UMLS CUI [1,2]
C3872791
Urin
Description

Anzahl gefüllter Urin-Gefäße [300µl]. Soll: 8

Data type

integer

Alias
UMLS CUI [1,1]
C0750480
UMLS CUI [1,2]
C0489902
Buffy Coat
Description

Anzahl gefüllter Buffy Coat-Gefäße. Soll: 2

Data type

integer

Alias
UMLS CUI [1,1]
C0750480
UMLS CUI [1,2]
C1561954
UMLS CUI [1,3]
C2936475
Blut- und Urinprobe
Description

Blut- und Urinprobe

Alias
UMLS CUI-1
C0005834
UMLS CUI-2
C0200354
Blutentnahme
Description

Blood sample source

Data type

text

Alias
UMLS CUI [1,1]
C0005834
UMLS CUI [1,2]
C0449416
Position bei Blutentnahme
Description

Position during blood collection

Data type

text

Alias
UMLS CUI [1,1]
C0005834
UMLS CUI [1,2]
C1262869
Dauer der Position vor Entnahme
Description

Dauer der Position des Patienten/Probanden vor Entnahme

Data type

integer

Measurement units
  • min
Alias
UMLS CUI [1,1]
C0449238
UMLS CUI [1,2]
C1262869
UMLS CUI [1,3]
C0332152
UMLS CUI [1,4]
C0005834
min
Dauer der Position vor Entnahme
Description

Duration of position prior to blood collection

Data type

boolean

Alias
UMLS CUI [1,1]
C0449238
UMLS CUI [1,2]
C1262869
UMLS CUI [1,3]
C0332152
UMLS CUI [1,4]
C0005834
Abstand zur letzten Nahrungsaufnahme
Description

Time since last food intake

Data type

text

Alias
UMLS CUI [1,1]
C0449238
UMLS CUI [1,2]
C0687676
UMLS CUI [1,3]
C0578574
Abstand zur letzten Nahrungsaufnahme
Description

Wenn bekannt, bitte die Gesamtstunden angeben

Data type

integer

Measurement units
  • hours
Alias
UMLS CUI [1,1]
C0449238
UMLS CUI [1,2]
C0687676
UMLS CUI [1,3]
C0578574
hours
Ernährung parenteral
Description

Ernährung parenteral

Data type

text

Alias
UMLS CUI [1]
C0030547
Menstruation bei Uringewinnung
Description

Menstruation bei Uringewinnung (bei Frauen)

Data type

text

Alias
UMLS CUI [1,1]
C0025344
UMLS CUI [1,2]
C0347984
UMLS CUI [1,3]
C0200354
Prozessschritte
Description

Prozessschritte

Alias
UMLS CUI-1
C0022885
UMLS CUI-2
C1261552
Zeitpunkt der Blutentnahme
Description

Zeitpunkt der Blutentnahme

Data type

datetime

Alias
UMLS CUI [1,1]
C0005834
UMLS CUI [1,2]
C1264639
Zeitpunkt der Urinabgabe
Description

Zeitpunkt der Urinabgabe (Klinik)

Data type

datetime

Alias
UMLS CUI [1,1]
C1264639
UMLS CUI [1,2]
C0200354
Zeitpunkt Eingang im Labor
Description

Zeitpunkt Eingang im Labor

Data type

datetime

Alias
UMLS CUI [1,1]
C1264639
UMLS CUI [1,2]
C3873589
Zeitpunkt Eingang im Labor (Urin)
Description

Wenn Urin-Eingang unterschiedlich von Blut

Data type

datetime

Alias
UMLS CUI [1,1]
C1264639
UMLS CUI [1,2]
C3873589
UMLS CUI [1,3]
C1610733
Ende der Zentrifugation
Description

Ende der Zentrifugation. Zeitstempel mit Jahr, Monat, Tag, Stunde und Minute. Zentrifugation der Primärgefäße bei 2.000 g für 10 Minuten ODER 3.000 g für 5 Minuten; gekühlten Zentrifugen: Temperatureinstellung auf 18°C; ungekühlten Zentrifugen: Zentrifuge nach jedem Lauf abkühlen lassen

Data type

partialDatetime

Alias
UMLS CUI [1,1]
C3899266
UMLS CUI [1,2]
C0200364
Ende der Zentrifugation (Urin)
Description

Wenn Urin-Eingang unterschiedlich von Blut, hier bitte Zeiten für Urin eintragen. Zeitstempel mit Jahr, Monat, Tag, Stunde und Minute

Data type

partialDatetime

Alias
UMLS CUI [1,1]
C3899266
UMLS CUI [1,2]
C0200364
UMLS CUI [1,3]
C1610733
Zeitpunkt Einfrieren aller Aliquots
Description

Zeitpunkt Einfrieren aller Aliquots bei -80°C (Serum, EDTA-Plasma, Citrat-Plasma, Urin, Buffy Coat).

Data type

datetime

Alias
UMLS CUI [1,1]
C1264639
UMLS CUI [1,2]
C0200367
Probebeschaffenheit (Blut)
Description

Probebeschaffenheit (Blut)

Alias
UMLS CUI-1
C0178913
UMLS CUI-2
C0871161
Unauffällig
Description

Ist die Probenbeschaffenheit unauffällig?

Data type

text

Alias
UMLS CUI [1,1]
C0178913
UMLS CUI [1,2]
C0205307
Lipämisch
Description

Ist die Probenbeschaffenheit lipämisch?

Data type

text

Alias
UMLS CUI [1,1]
C0178913
UMLS CUI [1,2]
C0460077
Ikterisch
Description

Ist die Probenbeschaffenheit ikterisch?

Data type

text

Alias
UMLS CUI [1,1]
C0178913
UMLS CUI [1,2]
C0460078
Hämolytisch
Description

Ist die Probenbeschaffenheit hämolytisch?

Data type

text

Alias
UMLS CUI [1,1]
C0178913
UMLS CUI [1,2]
C0312853
Probenbeschaffenheit (Urin)
Description

Probenbeschaffenheit (Urin)

Alias
UMLS CUI-1
C0871161
UMLS CUI-2
C1610733
Unauffällig
Description

Ist die Probenbeschaffenheit unauffällig?

Data type

text

Alias
UMLS CUI [1,1]
C1610733
UMLS CUI [1,2]
C0205307
Trüb
Description

Ist die Probenbeschaffenheit trüb?

Data type

text

Alias
UMLS CUI [1,1]
C1610733
UMLS CUI [1,2]
C0278034
Blutig
Description

Ist die Probenbeschaffenheit blutig?

Data type

text

Alias
UMLS CUI [1,1]
C1610733
UMLS CUI [1,2]
C0333275
Kommentare
Description

Kommentare

Alias
UMLS CUI-1
C0947611
Kommentar (allgemein)
Description

Comments (general)

Data type

text

Alias
UMLS CUI [1]
C0947611
Kommentar (Aliquots)
Description

Kommentar

Data type

text

Alias
UMLS CUI [1,1]
C1510844
UMLS CUI [1,2]
C0947611

Similar models

Biobanking Basic Set

  1. StudyEvent: ODM
    1. Biobanking Basic Set
Name
Type
Description | Question | Decode (Coded Value)
Data type
Alias
Item Group
Anzahl gefüllter Aliquot-Gefäße
C1510844 (UMLS CUI-1)
C1561954 (UMLS CUI-2)
C0750480 (UMLS CUI-3)
Number of serum tubes
Item
Serum
integer
C0750480 (UMLS CUI [1,1])
C1292516 (UMLS CUI [1,2])
Number of EDTA plasma tubes
Item
EDTA-Plasma
integer
C0750480 (UMLS CUI [1,1])
C3872626 (UMLS CUI [1,2])
Number of citrate tubes
Item
Citrat-Plasma
integer
C0750480 (UMLS CUI [1,1])
C3872791 (UMLS CUI [1,2])
Number of urine tubes
Item
Urin
integer
C0750480 (UMLS CUI [1,1])
C0489902 (UMLS CUI [1,2])
Number of buffy coat tubes
Item
Buffy Coat
integer
C0750480 (UMLS CUI [1,1])
C1561954 (UMLS CUI [1,2])
C2936475 (UMLS CUI [1,3])
Item Group
Blut- und Urinprobe
C0005834 (UMLS CUI-1)
C0200354 (UMLS CUI-2)
Item
Blutentnahme
text
C0005834 (UMLS CUI [1,1])
C0449416 (UMLS CUI [1,2])
Code List
Blutentnahme
CL Item
venös (venous)
CL Item
arteriell (arterial)
CL Item
unbekannt (unknown)
CL Item
nicht erhoben (not assessed)
Item
Position bei Blutentnahme
text
C0005834 (UMLS CUI [1,1])
C1262869 (UMLS CUI [1,2])
Code List
Position bei Blutentnahme
CL Item
sitzend (sitting)
CL Item
liegend (lying)
CL Item
unbekannt (unkown)
CL Item
nicht erhoben (not assessed)
Duration of position prior to blood collection
Item
Dauer der Position vor Entnahme
integer
C0449238 (UMLS CUI [1,1])
C1262869 (UMLS CUI [1,2])
C0332152 (UMLS CUI [1,3])
C0005834 (UMLS CUI [1,4])
Duration of position prior to blood collection
Item
Dauer der Position vor Entnahme
boolean
C0449238 (UMLS CUI [1,1])
C1262869 (UMLS CUI [1,2])
C0332152 (UMLS CUI [1,3])
C0005834 (UMLS CUI [1,4])
Item
Abstand zur letzten Nahrungsaufnahme
text
C0449238 (UMLS CUI [1,1])
C0687676 (UMLS CUI [1,2])
C0578574 (UMLS CUI [1,3])
Code List
Abstand zur letzten Nahrungsaufnahme
CL Item
< 8 Std. (< 8 h)
CL Item
unbekannt (unkown)
CL Item
nicht erhoben (not assessed)
CL Item
≥ 8 Std. (≥ 8 h)
Hours since last food intake
Item
Abstand zur letzten Nahrungsaufnahme
integer
C0449238 (UMLS CUI [1,1])
C0687676 (UMLS CUI [1,2])
C0578574 (UMLS CUI [1,3])
Item
Ernährung parenteral
text
C0030547 (UMLS CUI [1])
Code List
Ernährung parenteral
CL Item
ja (yes)
CL Item
nein (no)
CL Item
unbekannt (unknown)
CL Item
nicht erhoben (not assessed)
Item
Menstruation bei Uringewinnung
text
C0025344 (UMLS CUI [1,1])
C0347984 (UMLS CUI [1,2])
C0200354 (UMLS CUI [1,3])
Code List
Menstruation bei Uringewinnung
CL Item
ja (yes)
CL Item
nein (no)
CL Item
unbekannt (unknown)
CL Item
nicht erhoben (not assessed)
Item Group
Prozessschritte
C0022885 (UMLS CUI-1)
C1261552 (UMLS CUI-2)
Date/Time of blood collection
Item
Zeitpunkt der Blutentnahme
datetime
C0005834 (UMLS CUI [1,1])
C1264639 (UMLS CUI [1,2])
Date/Time of urine collection
Item
Zeitpunkt der Urinabgabe
datetime
C1264639 (UMLS CUI [1,1])
C0200354 (UMLS CUI [1,2])
Date/Time of receipt at laboratory
Item
Zeitpunkt Eingang im Labor
datetime
C1264639 (UMLS CUI [1,1])
C3873589 (UMLS CUI [1,2])
Date/Time of urine receipt at the laboratory
Item
Zeitpunkt Eingang im Labor (Urin)
datetime
C1264639 (UMLS CUI [1,1])
C3873589 (UMLS CUI [1,2])
C1610733 (UMLS CUI [1,3])
End Date/Time of centrifugation
Item
Ende der Zentrifugation
partialDatetime
C3899266 (UMLS CUI [1,1])
C0200364 (UMLS CUI [1,2])
End Date/Time of urine centrifugation
Item
Ende der Zentrifugation (Urin)
partialDatetime
C3899266 (UMLS CUI [1,1])
C0200364 (UMLS CUI [1,2])
C1610733 (UMLS CUI [1,3])
Date/Time freezing all aliquots
Item
Zeitpunkt Einfrieren aller Aliquots
datetime
C1264639 (UMLS CUI [1,1])
C0200367 (UMLS CUI [1,2])
Item Group
Probebeschaffenheit (Blut)
C0178913 (UMLS CUI-1)
C0871161 (UMLS CUI-2)
Item
Unauffällig
text
C0178913 (UMLS CUI [1,1])
C0205307 (UMLS CUI [1,2])
Code List
Unauffällig
CL Item
ja (yes)
CL Item
nein (no)
CL Item
unbekannt (unknown)
CL Item
nicht erhoben (not assessed)
Item
Lipämisch
text
C0178913 (UMLS CUI [1,1])
C0460077 (UMLS CUI [1,2])
Code List
Lipämisch
CL Item
ja (yes)
CL Item
nein (no)
CL Item
unbekannt (unknown)
CL Item
nicht erhoben (not assessed)
Item
Ikterisch
text
C0178913 (UMLS CUI [1,1])
C0460078 (UMLS CUI [1,2])
Code List
Ikterisch
CL Item
ja (yes)
CL Item
nein (no)
CL Item
unbekannt (unknown)
CL Item
nicht erhoben (not assessed)
Item
Hämolytisch
text
C0178913 (UMLS CUI [1,1])
C0312853 (UMLS CUI [1,2])
Code List
Hämolytisch
CL Item
ja (yes)
CL Item
nein (no)
CL Item
unbekannt (unknown)
CL Item
nicht erhoben (not assessed)
Item Group
Probenbeschaffenheit (Urin)
C0871161 (UMLS CUI-1)
C1610733 (UMLS CUI-2)
Item
Unauffällig
text
C1610733 (UMLS CUI [1,1])
C0205307 (UMLS CUI [1,2])
Code List
Unauffällig
CL Item
ja (yes)
CL Item
nein (no)
CL Item
unbekannt (unknown)
CL Item
nicht erhoben (not assessed)
Item
Trüb
text
C1610733 (UMLS CUI [1,1])
C0278034 (UMLS CUI [1,2])
Code List
Trüb
CL Item
ja (yes)
CL Item
nein (no)
CL Item
unbekannt (unknown)
CL Item
nicht erhoben (not assessed)
Item
Blutig
text
C1610733 (UMLS CUI [1,1])
C0333275 (UMLS CUI [1,2])
Code List
Blutig
CL Item
ja (yes)
CL Item
nein (no)
CL Item
unbekannt (unknown)
CL Item
nicht erhoben (not assessed)
Item Group
Kommentare
C0947611 (UMLS CUI-1)
Comments (general)
Item
Kommentar (allgemein)
text
C0947611 (UMLS CUI [1])
Comments (aliquots)
Item
Kommentar (Aliquots)
text
C1510844 (UMLS CUI [1,1])
C0947611 (UMLS CUI [1,2])

Please use this form for feedback, questions and suggestions for improvements.

Fields marked with * are required.

Do you need help on how to use the search function? Please watch the corresponding tutorial video for more details and learn how to use the search function most efficiently.

Watch Tutorial