ID

45652

Description

Principal Investigator: Richard A. Young, Whitehead Institute for Biomedical Research, Cambridge, MA and Massachusetts Institute of Technology, Cambridge, MA, USA MeSH: Precursor T-Cell Lymphoblastic Leukemia-Lymphoma https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs001242 ChIP-Seq data from 102 cell lines were processed to identify insertions relative to the human reference genome. To confirm the ability of a computational pipeline to identify insertions that are actually present in these genomes, we PCR-amplified and deeply sequenced regions where insertions were predicted to exist in MOLT4 T-cell acute lymphoblastic leukemia cells. The current study release makes available sequences of amplicons from a tumor cell genome (MOLT4) where a computational pipeline predicted small insertions from orthogonal data.

Link

dbGaP study = phs001242

Keywords

  1. 3/21/23 3/21/23 - Simon Heim
Copyright Holder

Richard A. Young, Whitehead Institute for Biomedical Research, Cambridge, MA and Massachusetts Institute of Technology, Cambridge, MA, USA

Uploaded on

March 21, 2023

DOI

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License

Creative Commons BY 4.0

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dbGaP phs001242 Small genomic insertions form enhancers that misregulate oncogenes

Subject - Consent Information

pht006071
Description

pht006071

Alias
UMLS CUI [1,1]
C3846158
Sample ID
Description

SUBJECT_ID

Data type

text

Alias
UMLS CUI [1,1]
C1299222
Consent status
Description

CONSENT

Data type

text

Alias
UMLS CUI [1,1]
C0021430
UMLS CUI [1,2]
C0449438

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Subject - Consent Information

Name
Type
Description | Question | Decode (Coded Value)
Data type
Alias
Item Group
pht006071
C3846158 (UMLS CUI [1,1])
SUBJECT_ID
Item
Sample ID
text
C1299222 (UMLS CUI [1,1])
Item
Consent status
text
C0021430 (UMLS CUI [1,1])
C0449438 (UMLS CUI [1,2])
Code List
Consent status
CL Item
General Research Use (GRU) (1)
C0021430 (UMLS CUI [1,1])
C0242481 (UMLS CUI [1,2])

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