ID

44926

Description

The implementation of targeted therapies for acute myeloid leukemia has been challenged by complex mutational patterns within and across patients as well as a dearth of pharmacologic agents for most mutational events. Here, we report initial findings from the Beat AML program on a cohort of 672 tumor specimens collected from 562 patients. We assessed these specimens using whole exome sequencing, RNA-sequencing, and ex vivo drug sensitivity analyses. Our data reveal novel mutational events not previously detected in AML. We show association of drug response with mutational status, including instances of drug sensitivity that are specific to combinatorial mutational events. Integration with RNA-sequencing also revealed gene expression signatures, which predict a role of specific gene networks in drug response. Collectively, this report offers a dataset, accessible by the Beat AML data viewer (www.vizome.org), that can be leveraged to address clinical, genomic, transcriptomic, and functional inquiries into the biology of AML. NCT 01728402 https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs001657.v1.p1

Link

www.vizome.org

Keywords

  1. 4/27/22 4/27/22 - Martin Dugas
  2. 4/27/22 4/27/22 - Martin Dugas
  3. 4/27/22 4/27/22 - Martin Dugas
  4. 4/27/22 4/27/22 - Martin Dugas
  5. 5/12/22 5/12/22 - Martin Dugas
  6. 5/12/22 5/12/22 - Martin Dugas
  7. 10/12/22 10/12/22 - Adrian Schulz
  8. 6/22/23 6/22/23 - Dr. Christian Niklas
Copyright Holder

Jeffrey W. Tyner, PhD. Oregon Health and Science University, Knight Cancer Institute, Portland, OR, USA

Uploaded on

April 27, 2022

DOI

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License

Creative Commons BY-NC 4.0

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Functional Genomic Landscape of Acute Myeloid Leukemia NCT 01728402 dbGaP Study Accession: phs001657.v1

pht009393.v1

  1. StudyEvent: SEV1
    1. pht009393.v1
pht009393.v1
Description

pht009393.v1

De-identified sample ID
Description

SAMPLE_ID

Data type

string

Analyte type
Description

ANALYTE_TYPE

Data type

string

Tumor status
Description

IS_TUMOR

Data type

text

Similar models

pht009393.v1

  1. StudyEvent: SEV1
    1. pht009393.v1
Name
Type
Description | Question | Decode (Coded Value)
Data type
Alias
Item Group
pht009393.v1
SAMPLE_ID
Item
De-identified sample ID
string
ANALYTE_TYPE
Item
Analyte type
string
Item
Tumor status
text
Code List
Tumor status
CL Item
Is normal (N)
CL Item
Is tumor (Y)

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