ID

16931

Description

NINDS Common Data Elements, Multiple Sclerosis Imaging Analysis Technique and Results – Baseline Used from the National Institute of Neurological Disorders and Stroke Common Data Elements (https://www.commondataelements.ninds.nih.gov/) References: Grinnon ST, Miller K, Marler JR, Lu Y, Stout A, Odenkirchen J, Kunitz S. National Institute of Neurological Disorders and Stroke Common Data Element Project - approach and methods. Clin Trials. 2012;9(3):322-9.

Lien

https://www.commondataelements.ninds.nih.gov/

Mots-clés

D009462

D003952

D008279

Common Data Elements (CDE)

14/08/2016 14/08/2016 -

Téléchargé le

14 août 2016

DOI

Pour une demande vous connecter.

Licence

Creative Commons BY-NC 3.0

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NINDS CDE Imaging Analysis Technique and Results – Baseline Multiple Sclerosis

model
Détails

Imaging Analysis Technique and Results – Baseline

1 Formulaires

StudyEvent: ODM
1. Imaging Analysis Technique and Results – Baseline

Name

Type

Description | Question | Decode (Coded Value)

Type de données

Alias

analysis lesion mri

Item Group

T2 LESIONS ANALYSIS

C0936012 (UMLS CUI-1)
C0221198 (UMLS CUI-2)
C0024485 (UMLS CUI-3)

Study ID

Item

Study ID

integer

C2826693 (UMLS CUI [1])

Study site name

Item

Study site name

text

C2825164 (UMLS CUI [1])

Subject ID

Item

Subject ID

integer

C2348585 (UMLS CUI [1])

Date of MRI

Item

Date of MRI

date

C0011008 (UMLS CUI [1,1])
C0024485 (UMLS CUI [1,2])

volume brain lesions

Item

1) Total volume of brain lesions on T2W image (cc):

float

C0449468 (UMLS CUI [1,1])
C0221505 (UMLS CUI [1,2])

Number of lesions

Item

2) Total T2 lesion counts:

text

C0449791 (UMLS CUI [1])

Number of lesions regional

Item

3) Regional T2 lesion counts:

text

C0449791 (UMLS CUI [1,1])
C0205147 (UMLS CUI [1,2])

undefined item

Code List

3) Regional T2 lesion counts:

CL Item

done (1)

CL Item

not done (2)

Number of lesions regional periventricular lesions

Item

i. Number of periventricular lesions:

integer

C0449791 (UMLS CUI [1,1])
C0205147 (UMLS CUI [1,2])
C3277690 (UMLS CUI [1,3])

Number of lesions regional juxtacortical lesions

Item

ii. Number of juxtacortical lesions:

integer

Number of lesions regional posterior fossa

Item

iii. Number of posterior fossa lesions:

integer

C0449791 (UMLS CUI [1,1])
C0205147 (UMLS CUI [1,2])
C1116439 (UMLS CUI [1,3])

Number of lesions regional cortical

Item

iv. Number of cortical lesions:

integer

C0449791 (UMLS CUI [1,1])
C0205147 (UMLS CUI [1,2])
C0007776 (UMLS CUI [1,3])

Number of lesions regional thalamus

Item

v. Number of thalamus lesions:

integer

C0449791 (UMLS CUI [1,1])
C0205147 (UMLS CUI [1,2])
C0039729 (UMLS CUI [1,3])

Number of lesions regional basal ganglia

Item

vi. Number of basal ganglia lesions:

integer

C0449791 (UMLS CUI [1,1])
C0205147 (UMLS CUI [1,2])
C0004781 (UMLS CUI [1,3])

Number of lesions regional

Item

vii. Number of other lesions whose type is not specified:

integer

C0449791 (UMLS CUI [1,1])
C0205147 (UMLS CUI [1,2])

Imaging technique

Item

4) Technique Used:

text

C0079595 (UMLS CUI [1])

Imaging technique

Code List

4) Technique Used:

CL Item

Manual tracing (1)

CL Item

Semi-automated (verified by experienced reader) (2)

CL Item

Fully automated segmentation (verified by experienced reader) (3)

CL Item

Other, specify: (4)

other

Item

If Other, please specify

text

C0205394 (UMLS CUI [1])

Pulse Sequence image

Item

5) Image pulse sequence used (Mention all that apply: FLAIR; PD/T2W FSE; T2W SE; Other, specify):

text

C3828438 (UMLS CUI [1,1])
C1704922 (UMLS CUI [1,2])

Slice thickness

Item

6) Slice thickness

float

C3829566 (UMLS CUI [1])

resolution image

Item

7) In slice resolution

float

C2699488 (UMLS CUI [1,1])
C1704922 (UMLS CUI [1,2])

Gap image

Item

8) Gap

float

C3887622 (UMLS CUI [1,1])
C1704922 (UMLS CUI [1,2])

reference Technique

Item

9) Technique reference (i.e. literature citation(s), MRI Acquisition Manual or Analysis Manual):

text

C0034925 (UMLS CUI [1,1])
C0449851 (UMLS CUI [1,2])

analysis GD-ENHANCING LESIONS

Item Group

GD-ENHANCING LESIONS ANALYSIS

C0936012 (UMLS CUI-1)
C1333400 (UMLS CUI-2)

Number of lesions Gd-enhancing lesions

Item

1) Total number of Gd-enhancing lesions:

integer

C0449791 (UMLS CUI [1,1])
C1333400 (UMLS CUI [1,2])

volume Gd-enhancing lesions

Item

2) Total volume of Gd-enhancing lesions

float

C0449468 (UMLS CUI [1,1])
C1333400 (UMLS CUI [1,2])

Imaging technique

Item

3) Technique Used:

text

C0079595 (UMLS CUI [1])

Imaging technique

Code List

3) Technique Used:

CL Item

T1-weighted spin echo with contrast (1)

CL Item

T1-weighted 3D gradient-echo with contrast (2)

CL Item

Other, specify: (3)

Other

Item

Please mention if other:

text

C0205394 (UMLS CUI [1])

Pulse Sequence image

Item

4) Image pulse sequence used:

text

C3828438 (UMLS CUI [1,1])
C1704922 (UMLS CUI [1,2])

Slice thickness

Item

5) Slice thickness

float

C3829566 (UMLS CUI [1])

resolution image

Item

6) In slice resolution

float

C2699488 (UMLS CUI [1,1])
C1704922 (UMLS CUI [1,2])

Gap image

Item

7) Gap

float

C3887622 (UMLS CUI [1,1])
C1704922 (UMLS CUI [1,2])

reference Technique

Item

8) Technique reference (i.e. literature citation(s), MRI Acquisition Manual or Analysis Manual):

text

C0034925 (UMLS CUI [1,1])
C0449851 (UMLS CUI [1,2])

analysis lesion mri

Item Group

T1 HYPOINTENSE LESIONS ANALYSIS

C0936012 (UMLS CUI-1)
C0221198 (UMLS CUI-2)
C0024485 (UMLS CUI-3)

Number of lesions

Item

1) Total number of T1 hypointense lesions:

integer

C0449791 (UMLS CUI [1])

volume lesion

Item

2) Total volume of T1 hypointense lesions

float

C0449468 (UMLS CUI [1,1])
C0221198 (UMLS CUI [1,2])

Imaging technique

Item

3) Technique Used:

text

C0079595 (UMLS CUI [1])

Imaging technique

Code List

3) Technique Used:

CL Item

Visual determination by experienced reader (1)

CL Item

Semi-automated (calculated through software, verified by experienced reader) (2)

CL Item

Fully automated segmentation and counting (3)

CL Item

Other, specify: (4)

Other

Item

Please mention if other:

text

C0205394 (UMLS CUI [1])

Pulse Sequence image

Item

4) Image pulse sequence used:

text

C3828438 (UMLS CUI [1,1])
C1704922 (UMLS CUI [1,2])

Pulse Sequence image

Code List

4) Image pulse sequence used:

CL Item

T1-weighted spin echo with contrast (1)

CL Item

T1-weighted spin echo without contrast (2)

CL Item

Other, specify: (3)

Other

Item

If other, please specify

text

C0205394 (UMLS CUI [1])

Slice thickness

Item

5) Slice thickness

float

C3829566 (UMLS CUI [1])

resolution image

Item

6) In slice resolution

float

C2699488 (UMLS CUI [1,1])
C1704922 (UMLS CUI [1,2])

Gap image

Item

7) Gap

float

C3887622 (UMLS CUI [1,1])
C1704922 (UMLS CUI [1,2])

reference Technique

Item

8) Technique reference (i.e. literature citation(s), MRI Acquisition Manual or Analysis Manual):

text

C0034925 (UMLS CUI [1,1])
C0449851 (UMLS CUI [1,2])

ANALYSIS BRAIN VOLUME

Item Group

BRAIN VOLUME ANALYSIS – ANSWER QUESTION 1 OR 2 (AND THE CORRESPONDING SUB-QUESTIONS), NOT BOTH

C0936012 (UMLS CUI-1)
C1113695 (UMLS CUI-2)

Brain volume

Item

1) a. Brain volume

float

C1113695 (UMLS CUI [1])

Imaging technique

Item

b. Technique Used:

text

C0079595 (UMLS CUI [1])

Imaging technique

Code List

b. Technique Used:

CL Item

Automated (1)

CL Item

Semi-automated (2)

CL Item

Manual (3)

Pulse Sequence image

Item

c. Image pulse sequence used:

text

C3828438 (UMLS CUI [1,1])
C1704922 (UMLS CUI [1,2])

Pulse Sequence image

Code List

c. Image pulse sequence used:

CL Item

Dual echo PD/T2W SE (1)

CL Item

FLAIR (2)

CL Item

PD SE (3)

CL Item

T2W SE (4)

CL Item

T1W SE (5)

CL Item

T1W 3D gradient-echo (6)

CL Item

Other, specify: (7)

Other

Item

If other, please specify

text

C0205394 (UMLS CUI [1])

Slice thickness

Item

d. Slice thickness

float

C3829566 (UMLS CUI [1])

resolution image

Item

e. In slice resolution

float

C2699488 (UMLS CUI [1,1])
C1704922 (UMLS CUI [1,2])

Gap image

Item

f. Gap

float

C3887622 (UMLS CUI [1,1])
C1704922 (UMLS CUI [1,2])

reference Technique

Item

g. Technique reference (i.e. literature citation(s), MRI Acquisition Manual or Analysis Manual):

text

C0034925 (UMLS CUI [1,1])
C0449851 (UMLS CUI [1,2])

Volume fraction Ventricular

Item

2) a. Ventricular volume fraction:

float

C0560268 (UMLS CUI [1,1])
C0007799 (UMLS CUI [1,2])

Volume fraction brain

Item

b. Brain volume fraction:

text

C0560268 (UMLS CUI [1,1])
C0006104 (UMLS CUI [1,2])

Volume fraction brain

Code List

b. Brain volume fraction:

CL Item

Automated (1)

CL Item

Semi-automated (2)

CL Item

Manual (3)

Pulse Sequence image

Item

c. Image pulse sequence used:

text

C3828438 (UMLS CUI [1,1])
C1704922 (UMLS CUI [1,2])

Pulse Sequence image

Code List

c. Image pulse sequence used:

CL Item

Dual echo PD/T2W SE (1)

CL Item

FLAIR (2)

CL Item

PD SE (3)

CL Item

T2W SE (4)

CL Item

T1W SE (5)

CL Item

T1W 3D gradient-echo (6)

CL Item

Other, specify: (7)

Other

Item

If other, please specify

text

C0205394 (UMLS CUI [1])

Slice thickness

Item

d. Slice thickness

float

C3829566 (UMLS CUI [1])

resolution image

Item

e. In slice resolution

float

C2699488 (UMLS CUI [1,1])
C1704922 (UMLS CUI [1,2])

Gap image

Item

f. Gap

float

C3887622 (UMLS CUI [1,1])
C1704922 (UMLS CUI [1,2])

reference Technique

Item

g. Technique reference (i.e. literature citation(s), MRI Acquisition Manual or Analysis Manual):

text

C0034925 (UMLS CUI [1,1])
C0449851 (UMLS CUI [1,2])

ANALYSIS VENTRICULAR VOLUME

Item Group

VENTRICULAR VOLUME ANALYSIS ANSWER QUESTION 1 OR 2 (AND THE CORRESPONDING SUB- QUESTIONS), BUT NOT BOTH

C0936012 (UMLS CUI-1)
C1980012 (UMLS CUI-2)

Ventricular volume

Item

1) a. Ventricular volume

float

C1980012 (UMLS CUI [1])

Imaging technique

Item

b. Technique Used:

text

C0079595 (UMLS CUI [1])

Imaging technique

Code List

b. Technique Used:

CL Item

Automated (1)

CL Item

Semi-automated (2)

CL Item

Manual (3)

Pulse Sequence image

Item

c. Image pulse sequence used:

text

C3828438 (UMLS CUI [1,1])
C1704922 (UMLS CUI [1,2])

Pulse Sequence image

Code List

c. Image pulse sequence used:

CL Item

Dual echo PD/T2W SE (1)

CL Item

FLAIR (2)

CL Item

PD SE (3)

CL Item

T2W SE (4)

CL Item

T1W SE (5)

CL Item

T1W 3D gradient-echo (6)

CL Item

Other, specify: (7)

Other

Item

If other, please specify

text

C0205394 (UMLS CUI [1])

Slice thickness

Item

d. Slice thickness

float

C3829566 (UMLS CUI [1])

resolution image

Item

e. In slice resolution

float

C2699488 (UMLS CUI [1,1])
C1704922 (UMLS CUI [1,2])

Gap image

Item

f. Gap

float

C3887622 (UMLS CUI [1,1])
C1704922 (UMLS CUI [1,2])

reference Technique

Item

g. Technique reference (i.e. literature citation(s), MRI Acquisition Manual or Analysis Manual):

text

C0034925 (UMLS CUI [1,1])
C0449851 (UMLS CUI [1,2])

Volume fraction Ventricular

Item

2) a. Ventricular volume fraction:

float

C0560268 (UMLS CUI [1,1])
C0007799 (UMLS CUI [1,2])

Imaging technique

Item

b. Technique Used:

text

C0079595 (UMLS CUI [1])

Volume fraction brain

Code List

b. Technique Used:

CL Item

Automated (1)

CL Item

Semi-automated (2)

CL Item

Manual (3)

Pulse Sequence image

Item

c. Image pulse sequence used:

text

C3828438 (UMLS CUI [1,1])
C1704922 (UMLS CUI [1,2])

Pulse Sequence image

Code List

c. Image pulse sequence used:

CL Item

Dual echo PD/T2W SE (1)

CL Item

FLAIR (2)

CL Item

PD SE (3)

CL Item

T2W SE (4)

CL Item

T1W SE (5)

CL Item

T1W 3D gradient-echo (6)

CL Item

Other, specify: (7)

Other

Item

If other, please specify

text

C0205394 (UMLS CUI [1])

Slice thickness

Item

d. Slice thickness

float

C3829566 (UMLS CUI [1])

resolution image

Item

e. In slice resolution

float

C2699488 (UMLS CUI [1,1])
C1704922 (UMLS CUI [1,2])

Gap image

Item

f. Gap

float

C3887622 (UMLS CUI [1,1])
C1704922 (UMLS CUI [1,2])

reference Technique

Item

g. Technique reference (i.e. literature citation(s), MRI Acquisition Manual or Analysis Manual):

text

C0034925 (UMLS CUI [1,1])
C0449851 (UMLS CUI [1,2])

ANALYSIS GRAY MATTER VOLUME

Item Group

GRAY MATTER VOLUME ANALYSIS – ANSWER QUESTION 1 OR 2, BUT NOT BOTH, THEN PROCEED TO QUESTION 3

C0936012 (UMLS CUI-1)
C0018220 (UMLS CUI-2)
C0449468 (UMLS CUI-3)

volume Gray matter

Item

1) Gray matter volume

text

C0449468 (UMLS CUI [1,1])
C0018220 (UMLS CUI [1,2])

volume fraction Gray matter

Item

2) Gray matter volume fraction:

text

C0560268 (UMLS CUI [1,1])
C0018220 (UMLS CUI [1,2])

pulse sequence Image

Item

3) Image pulse sequence used:

text

C3828438 (UMLS CUI [1,1])
C1704922 (UMLS CUI [1,2])

pulse sequence Image

Code List

3) Image pulse sequence used:

CL Item

Absolute gray matter volume (non-normalized) (1)

CL Item

Absolute gray matter volume (normalized) (2)

CL Item

Gray matter fraction (3)

CL Item

Other, specify: (4)

Other

Item

If other, please specify

text

C0205394 (UMLS CUI [1])

Pulse Sequence image

Item

4) Image pulse sequence used:

text

C3828438 (UMLS CUI [1,1])
C1704922 (UMLS CUI [1,2])

Pulse Sequence image

Code List

4) Image pulse sequence used:

CL Item

Dual echo PD/T2W SE (1)

CL Item

FLAIR (2)

CL Item

PD SE (3)

CL Item

T2W SE (4)

CL Item

T1W SE (5)

CL Item

T1W 3D gradient-echo (6)

CL Item

Other, specify: (7)

Other

Item

If other, please specify

text

C0205394 (UMLS CUI [1])

Slice thickness

Item

5) Slice thickness

float

C3829566 (UMLS CUI [1])

resolution image

Item

6) In slice resolution

float

C2699488 (UMLS CUI [1,1])
C1704922 (UMLS CUI [1,2])

Gap image

Item

7) Gap

float

C3887622 (UMLS CUI [1,1])
C1704922 (UMLS CUI [1,2])

reference Technique

Item

8) Technique reference (i.e. literature citation(s), MRI Acquisition Manual or Analysis Manual):

text

C0034925 (UMLS CUI [1,1])
C0449851 (UMLS CUI [1,2])

ANALYSIS GRAY MATTER LESIONS

Item Group

GRAY MATTER LESIONS ANALYSIS

C0936012 (UMLS CUI-1)
C0018220 (UMLS CUI-2)
C0221198 (UMLS CUI-3)

Number of lesion gray matter

Item

1) Total number of gray matter lesions:

integer

C0449791 (UMLS CUI [1,1])
C0018220 (UMLS CUI [1,2])

volume Gray matter

Item

2) Total volume of gray matter lesions

float

C0449468 (UMLS CUI [1,1])
C0018220 (UMLS CUI [1,2])

Imaging technique

Item

3) Technique Used:

text

C0079595 (UMLS CUI [1])

undefined item

Code List

3) Technique Used:

CL Item

Visual determination by experienced reader (1)

CL Item

Semi-automated (calculated through software, verified by experienced reader) (2)

CL Item

Fully automated segmentation, localization, and counting (3)

CL Item

Other, specify: (4)

Other

Item

If other, please specify

text

C0205394 (UMLS CUI [1])

Pulse Sequence image

Item

4) Image pulse sequence used:

text

C3828438 (UMLS CUI [1,1])
C1704922 (UMLS CUI [1,2])

Pulse Sequence image

Code List

4) Image pulse sequence used:

CL Item

FLAIR (1)

CL Item

T1W 3D gradient-echo (2)

CL Item

DIR (3)

CL Item

PSIR (4)

CL Item

Other, specify: (5)

Other

Item

If other, please specify

text

C0205394 (UMLS CUI [1])

Slice thickness

Item

5) Slice thickness

float

C3829566 (UMLS CUI [1])

resolution image

Item

6) In slice resolution

float

C2699488 (UMLS CUI [1,1])
C1704922 (UMLS CUI [1,2])

Gap image

Item

7) Gap

float

C3887622 (UMLS CUI [1,1])
C1704922 (UMLS CUI [1,2])

reference Technique

Item

8) Technique reference (i.e. literature citation(s), MRI Acquisition Manual or Analysis Manual):

text

C0034925 (UMLS CUI [1,1])
C0449851 (UMLS CUI [1,2])

ANALYSIS WHITE MATTER VOLUME

Item Group

WHITE MATTER VOLUME ANALYSIS – ANSWER QUESTION 1 OR 2, BUT NOT BOTH, THEN PROCEED TO QUESTION 3

C0936012 (UMLS CUI-1)
C0682708 (UMLS CUI-2)
C0449468 (UMLS CUI-3)

volume White matter

Item

1) White matter volume

float

C0449468 (UMLS CUI [1,1])
C0682708 (UMLS CUI [1,2])

volume fraction White matter

Item

2) White matter volume fraction:

text

C0560268 (UMLS CUI [1,1])
C0682708 (UMLS CUI [1,2])

Imaging technique

Item

3) White matter volume OR White matter volume fraction a. Technique Used:

text

C0079595 (UMLS CUI [1])

undefined item

Code List

3) White matter volume OR White matter volume fraction a. Technique Used:

CL Item

Absolute white matter volume (non-normalized) (1)

CL Item

Absolute white matter volume (normalized) (2)

CL Item

White matter fraction (3)

CL Item

Other, specify (4)

Other

Item

If other, please specify

text

C0205394 (UMLS CUI [1])

Pulse Sequence image

Item

b. Image pulse sequence used:

text

C3828438 (UMLS CUI [1,1])
C1704922 (UMLS CUI [1,2])

Pulse Sequence image

Code List

b. Image pulse sequence used:

CL Item

Dual echo PD/T2W SE (1)

CL Item

FLAIR (2)

CL Item

PD SE (3)

CL Item

T2W SE (4)

CL Item

T1W SE (5)

CL Item

T1W 3D gradient-echo (6)

CL Item

Other, specify: (7)

Other

Item

If other, please specify

text

C0205394 (UMLS CUI [1])

Slice thickness

Item

c. Slice thickness

float

C3829566 (UMLS CUI [1])

resolution image

Item

d. In slice resolution

float

C2699488 (UMLS CUI [1,1])
C1704922 (UMLS CUI [1,2])

Gap image

Item

e. Gap

float

C3887622 (UMLS CUI [1,1])
C1704922 (UMLS CUI [1,2])

reference Technique

Item

f. Technique reference (i.e. literature citation(s), MRI Acquisition Manual or Analysis Manual):

text

C0034925 (UMLS CUI [1,1])
C0449851 (UMLS CUI [1,2])

VOLUMETRIC ANALYSIS BRAIN REGIONAL

Item Group

REGIONAL BRAIN VOLUMETRIC ANALYSIS

C3825502 (UMLS CUI-1)
C0006104 (UMLS CUI-2)
C0205147 (UMLS CUI-3)

volume cerebral

Item

1) Central cerebral volume

float

C0449468 (UMLS CUI [1,1])
C0006104 (UMLS CUI [1,2])

Cortical thickness

Item

2) Cortical thickness

float

volume Hippocampus

Item

3) Brain structure volumes a. Hippocampus

float

C0449468 (UMLS CUI [1,1])
C0019564 (UMLS CUI [1,2])

volume Thalamus

Item

b. Thalamus

float

C0449468 (UMLS CUI [1,1])
C0039729 (UMLS CUI [1,2])

volumetric analyses

Item Group

Other regional volumetric analyses (COMPLETE AS MANY TIMES AS NEEDED):

C3825502 (UMLS CUI-1)

Imaging technique

Item

1) Technique Used:

text

C0079595 (UMLS CUI [1])

undefined item

Code List

1) Technique Used:

CL Item

Central cerebral volume (1)

CL Item

Cortical thickness (2)

CL Item

Brain structure volume (3)

volume brain

Item

a. If Brain structure volume, specify structure:

text

C0449468 (UMLS CUI [1,1])
C0006104 (UMLS CUI [1,2])

undefined item

Code List

a. If Brain structure volume, specify structure:

CL Item

Hippocampus (1)

CL Item

Thalamus (2)

CL Item

Lobes (3)

CL Item

Other, specify: (4)

Other

Item

If other, please specify

text

C0205394 (UMLS CUI [1])

Pulse Sequence image

Item

2) Image pulse sequence used:

text

C3828438 (UMLS CUI [1,1])
C1704922 (UMLS CUI [1,2])

Pulse Sequence image

Code List

2) Image pulse sequence used:

CL Item

Dual echo PD/T2W SE (1)

CL Item

FLAIR (2)

CL Item

PD SE (3)

CL Item

T2W SE (4)

CL Item

T1W SE (5)

CL Item

T1W 3D gradient-echo (6)

CL Item

Other, specify: (7)

Other

Item

If other, please specify

text

C0205394 (UMLS CUI [1])

Slice thickness

Item

3) Slice thickness

float

C3829566 (UMLS CUI [1])

resolution image

Item

4) In slice resolution

float

C2699488 (UMLS CUI [1,1])
C1704922 (UMLS CUI [1,2])

Gap image

Item

5) Gap

float

C3887622 (UMLS CUI [1,1])
C1704922 (UMLS CUI [1,2])

reference Technique

Item

6) Technique reference (i.e. literature citation(s), MRI Acquisition Manual or Analysis Manual):

text

C0034925 (UMLS CUI [1,1])
C0449851 (UMLS CUI [1,2])

ANALYSIS SPINAL CORD LESIONS

Item Group

SPINAL CORD LESIONS ANALYSIS

C0936012 (UMLS CUI-1)
C0241224 (UMLS CUI-2)

Number of lesion spinal cord lesions

Item

1) Total number of spinal cord lesions:

integer

C0449791 (UMLS CUI [1,1])
C0241224 (UMLS CUI [1,2])

region Spinal cord lesion

Item

2) Spinal cord lesion region (Mention all that apply: C1-C7; T1-T12; L1-L5 ):

text

C1515974 (UMLS CUI [1,1])
C0241224 (UMLS CUI [1,2])

location Spinal cord lesions

Item

3) Spinal cord lesions location (mention all that apply: Anterior; Posterior; Lateral ):

text

C0450429 (UMLS CUI [1,1])
C0241224 (UMLS CUI [1,2])

area Spinal cord

Item

4) Spinal cord area

float

C2586162 (UMLS CUI [1,1])
C0037925 (UMLS CUI [1,2])

Volume Spinal cord

Item

4) Spinal cord Volume

float

C2700258 (UMLS CUI [1,1])
C0037925 (UMLS CUI [1,2])

Imaging technique

Item

5) Technique Used:

text

C0079595 (UMLS CUI [1])

undefined item

Code List

5) Technique Used:

CL Item

Visual determination by experienced reader (1)

CL Item

Semi-automated (calculated through software, verified by experienced reader) (2)

CL Item

Fully automated segmentation, localization and counting (3)

CL Item

Other, specify: (4)

Other

Item

If other, please specify

text

C0205394 (UMLS CUI [1])

Pulse Sequence image

Item

6) Image pulse sequence used:

text

C3828438 (UMLS CUI [1,1])
C1704922 (UMLS CUI [1,2])

Pulse Sequence image

Code List

6) Image pulse sequence used:

CL Item

T2-weighted (T2) (1)

CL Item

Proton-density weighted (PD) (2)

CL Item

Short tau inversion recovery (STIR) (3)

CL Item

Other, specify: (4)

Other

Item

If other, please specify

text

C0205394 (UMLS CUI [1])

Slice thickness

Item

7) Slice thickness

float

C3829566 (UMLS CUI [1])

resolution image

Item

8) In slice resolution

float

C2699488 (UMLS CUI [1,1])
C1704922 (UMLS CUI [1,2])

Gap image

Item

9) Gap

float

C3887622 (UMLS CUI [1,1])
C1704922 (UMLS CUI [1,2])

reference Technique

Item

10) Technique reference (i.e. literature citation(s), MRI Acquisition Manual or Analysis Manual):

text

C0034925 (UMLS CUI [1,1])
C0449851 (UMLS CUI [1,2])

SPINAL CORD VOLUME AREA

Item Group

SPINAL CORD VOLUME/CROSS-SECTIONAL AREA

C0037925 (UMLS CUI-1)
C2700258 (UMLS CUI-2)
C2586162 (UMLS CUI-3)

Imaging technique

Item

1) Technique Used:

text

C0079595 (UMLS CUI [1])

Imaging technique

Code List

1) Technique Used:

CL Item

Manual tracing by experienced reader (1)

CL Item

Semi-automated (calculated through software, verified by experienced reader) (2)

CL Item

Losseff – 3mm x 5 axial slices from C2-3 up (3)

CL Item

Fully automated segmentation (4)

CL Item

Other, specify: (5)

Other

Item

If other, please specify

text

C0205394 (UMLS CUI [1])

Pulse Sequence image

Item

2) Image pulse sequence used:

text

C3828438 (UMLS CUI [1,1])
C1704922 (UMLS CUI [1,2])

Pulse Sequence image

Code List

2) Image pulse sequence used:

CL Item

T2-weighted (T2) (1)

CL Item

Proton-density weighted (PD) (2)

CL Item

Short tau inversion recovery (STIR) (3)

CL Item

T1W SE (4)

CL Item

T1W 3D gradient-echo (5)

CL Item

Other, specify: (6)

Other

Item

If other, please specify

text

C0205394 (UMLS CUI [1])

Slice thickness

Item

3) Slice thickness

float

C3829566 (UMLS CUI [1])

resolution image

Item

4) In slice resolution

float

C2699488 (UMLS CUI [1,1])
C1704922 (UMLS CUI [1,2])

Gap image

Item

5) Gap

float

C3887622 (UMLS CUI [1,1])
C1704922 (UMLS CUI [1,2])

reference Technique

Item

6) Technique reference ( i.e. literature citation(s), MRI Acquisition Manual or Analysis Manual):

text

C0034925 (UMLS CUI [1,1])
C0449851 (UMLS CUI [1,2])

Tissue Integrity Measures

Item Group

Tissue Integrity Measures

C0518718 (UMLS CUI-1)
C0079809 (UMLS CUI-2)

magnetisation transfer imaging ratio

Item

MTR

boolean

C2584640 (UMLS CUI [1,1])
C0456603 (UMLS CUI [1,2])

Sequence Type

Item

Sequence Type

text

C1519249 (UMLS CUI [1,1])
C0332307 (UMLS CUI [1,2])

Slice thickness

Item

Slice thickness

text

C3829566 (UMLS CUI [1])

Reference Technique

Item

Technique Reference

text

C0034925 (UMLS CUI [1,1])
C0449851 (UMLS CUI [1,2])

Brain

Item

Whole Brain

boolean

C0006104 (UMLS CUI [1])

white matter Normal

Item

Normal Appearing WM

boolean

C0682708 (UMLS CUI [1,1])
C0205307 (UMLS CUI [1,2])

Grey matter Normal

Item

Normal Appearing GM

boolean

C0018220 (UMLS CUI [1,1])
C0205307 (UMLS CUI [1,2])

Measurements Other Regional

Item

Other Regional Measurements

boolean

C0242485 (UMLS CUI [1,1])
C0205394 (UMLS CUI [1,2])
C0205147 (UMLS CUI [1,3])

DTI

Item

DTI

boolean

C1537007 (UMLS CUI [1])

Sequence Type

Item

Sequence Type

text

C1519249 (UMLS CUI [1,1])
C0332307 (UMLS CUI [1,2])

Slice thickness

Item

Slice thickness

text

C3829566 (UMLS CUI [1])

Reference Technique

Item

Technique Reference

text

C0034925 (UMLS CUI [1,1])
C0449851 (UMLS CUI [1,2])

Whole Brain

Item

Whole Brain

boolean

C0006104 (UMLS CUI [1])

Normal Appearing WM

Item

Normal Appearing WM

boolean

C0682708 (UMLS CUI [1,1])
C0205307 (UMLS CUI [1,2])

Normal Appearing GM

Item

Normal Appearing GM

boolean

C0018220 (UMLS CUI [1,1])
C0205307 (UMLS CUI [1,2])

Other Regional Measurements

Item

Other Regional Measurements

boolean

C0242485 (UMLS CUI [1,1])
C0205394 (UMLS CUI [1,2])
C0205147 (UMLS CUI [1,3])

Spectroscopy

Item

Spectroscopy

boolean

C1283206 (UMLS CUI [1])

Sequence Type

Item

Sequence Type

text

C1519249 (UMLS CUI [1,1])
C0332307 (UMLS CUI [1,2])

Slice thickness

Item

Slice thickness

text

C3829566 (UMLS CUI [1])

Reference Technique

Item

Technique Reference

text

C0034925 (UMLS CUI [1,1])
C0449851 (UMLS CUI [1,2])

Whole Brain

Item

Whole Brain

boolean

C0006104 (UMLS CUI [1])

Normal Appearing WM

Item

Normal Appearing WM

boolean

C0682708 (UMLS CUI [1,1])
C0205307 (UMLS CUI [1,2])

Normal Appearing GM

Item

Normal Appearing GM

boolean

C0018220 (UMLS CUI [1,1])
C0205307 (UMLS CUI [1,2])

Other Regional Measurements

Item

Other Regional Measurements

boolean

C0242485 (UMLS CUI [1,1])
C0205394 (UMLS CUI [1,2])
C0205147 (UMLS CUI [1,3])

Other

Item

Other

boolean

C0205394 (UMLS CUI [1])

Sequence Type

Item

Sequence Type

text

C1519249 (UMLS CUI [1,1])
C0332307 (UMLS CUI [1,2])

Slice thickness

Item

Slice thickness

text

C3829566 (UMLS CUI [1])

Reference Technique

Item

Technique Reference

text

C0034925 (UMLS CUI [1,1])
C0449851 (UMLS CUI [1,2])

WM Normal Appearing

Item

Normal Appearing WM

boolean

C0682708 (UMLS CUI [1,1])
C0205307 (UMLS CUI [1,2])

GM Normal Appearing

Item

Normal Appearing GM

boolean

C0018220 (UMLS CUI [1,1])
C0205307 (UMLS CUI [1,2])

Other Regional Measurements

Item

Other Regional Measurements

boolean

C0242485 (UMLS CUI [1,1])
C0205394 (UMLS CUI [1,2])
C0205147 (UMLS CUI [1,3])

MTR

Item Group

MTR – specify units and values

C2584640 (UMLS CUI-1)
C0456603 (UMLS CUI-2)

MTR Mean

Item

Mean MTR unit

boolean

C2584640 (UMLS CUI [1,1])
C0456603 (UMLS CUI [1,2])
C0444504 (UMLS CUI [1,3])

Whole brain

Item

Whole brain

text

C0006104 (UMLS CUI [1])

WM Normal Appearing

Item

Normal Appearing WM

text

C0682708 (UMLS CUI [1,1])
C0205307 (UMLS CUI [1,2])

GM Normal Appearing

Item

Normal Appearing GM

text

C0018220 (UMLS CUI [1,1])
C0205307 (UMLS CUI [1,2])

MTR histogram peak position

Item

MTR histogram peak position unit

text

C2584640 (UMLS CUI [1,1])
C0456603 (UMLS CUI [1,2])
C2348974 (UMLS CUI [1,3])
C0444505 (UMLS CUI [1,4])
C0733755 (UMLS CUI [1,5])

Whole brain

Item

Whole brain

text

C0006104 (UMLS CUI [1])

WM Normal Appearing

Item

Normal Appearing WM

text

C0682708 (UMLS CUI [1,1])
C0205307 (UMLS CUI [1,2])

GM Normal Appearing

Item

Normal Appearing GM

text

C0018220 (UMLS CUI [1,1])
C0205307 (UMLS CUI [1,2])

MTR histogram peak height

Item

MTR histogram peak height unit

text

C2584640 (UMLS CUI [1,1])
C0456603 (UMLS CUI [1,2])
C2348974 (UMLS CUI [1,3])
C0444505 (UMLS CUI [1,4])
C0489786 (UMLS CUI [1,5])

Whole brain

Item

Whole brain

text

C0006104 (UMLS CUI [1])

WM Normal Appearing

Item

Normal Appearing WM

text

C0682708 (UMLS CUI [1,1])
C0205307 (UMLS CUI [1,2])

GM Normal Appearing

Item

Normal Appearing GM

text

C0018220 (UMLS CUI [1,1])
C0205307 (UMLS CUI [1,2])

DTI

Item Group

DTI – specify units and values

C1537007 (UMLS CUI-1)

Mean FA unit

Item

Mean FA unit

text

Whole brain

Item

Whole brain

text

C0006104 (UMLS CUI [1])

WM Normal Appearing

Item

Normal Appearing WM

text

C0682708 (UMLS CUI [1,1])
C0205307 (UMLS CUI [1,2])

GM Normal Appearing

Item

Normal Appearing GM

text

C0018220 (UMLS CUI [1,1])
C0205307 (UMLS CUI [1,2])

Mean ADC unit

Item

Mean ADC unit

text

Whole brain

Item

Whole brain

text

C0006104 (UMLS CUI [1])

WM Normal Appearing

Item

Normal Appearing WM

text

C0682708 (UMLS CUI [1,1])
C0205307 (UMLS CUI [1,2])

GM Normal Appearing

Item

Normal Appearing GM

text

C0018220 (UMLS CUI [1,1])
C0205307 (UMLS CUI [1,2])

Mean axial diffusivity unit

Item

Mean axial diffusivity unit

text

Whole brain

Item

Whole brain

text

C0006104 (UMLS CUI [1])

WM Normal Appearing

Item

Normal Appearing WM

text

C0682708 (UMLS CUI [1,1])
C0205307 (UMLS CUI [1,2])

GM Normal Appearing

Item

Normal Appearing GM

text

C0018220 (UMLS CUI [1,1])
C0205307 (UMLS CUI [1,2])

Mean radial diffusivity unit

Item

Mean radial diffusivity unit

text

Whole brain

Item

Whole brain

text

C0006104 (UMLS CUI [1])

WM Normal Appearing

Item

Normal Appearing WM

text

C0682708 (UMLS CUI [1,1])
C0205307 (UMLS CUI [1,2])

GM Normal Appearing

Item

Normal Appearing GM

text

C0018220 (UMLS CUI [1,1])
C0205307 (UMLS CUI [1,2])

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NINDS CDE Imaging Analysis Technique and Results – Baseline Multiple Sclerosis

Imaging Analysis Technique and Results – Baseline

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