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dbGaP phs000360 eMERGE Network Combined Dataset - Eligibility

- 12/10/22 - 7 Formulär, 1 Item-grupp, 10 Dataelement, 1 Språk
Item-grupp: IG.elig
Principal Investigator: Rex Chisholm, PhD, Northwestern University, Evanston, IL, USA MeSH: Electronic Health Records,Hematologic Diseases,Chronic Disease,Anthropometry,Lipids,Diabetic Retinopathy,Hypothyroidism https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs000360 The **e**lectronic **M**edical **R**ecords and **Ge**nomics (eMERGE) Network is a consortium of five participating sites (Group Health Seattle, Marshfield Clinic, Mayo Clinic, Northwestern University, and Vanderbilt University) funded by the NHGRI to investigate the use of electronic medical record systems for genomic research. The goal of eMERGE is to conduct genome-wide association studies in approximately 19,000 individuals using EMR-derived phenotypes and DNA from linked Biorepositories. Using electronic phenotyping methods, the consortium used DNA samples from all participating sites to explore the genetic determinants of red cell indices, white blood count (WBC) differential, diabetic retinopathy, height, serum lipid levels, specifically total cholesterol, HDL (high density lipoprotein), LDL (low density lipoprotein), and triglycerides, and autoimmune hypothyroidism as well as using the phenome-wide association study (PheWAS) paradigm to replicate and discover relationships between targeted genotypes with multiple phenotypes. eMERGE led studies for which original genotyping was performed and are included in this merged set: - Genome-Wide Association Study on Cataract and HDL in the Personalized Medicine Research Project Cohort, phs000170 - Development and Use of Network Infrastructure for High-Throughput GWA Studies, phs000234 - Vanderbilt Genome-Electronic Records (VGER) Project: QRS Duration, phs000188 - Northwestern NUgene Project: Type 2 Diabetes, phs000237 - A Genome-Wide Association Study of Peripheral Arterial Disease, phs000203 Sites and participants include: *Vanderbilt University:* BioVU, Vanderbilt's DNA databank, is an enabling resource for exploration of the relationships among genetic variation, disease susceptibility, and variable drug responses, and represents a key first step in moving the emerging sciences of genomics and pharmacogenomics from research tools to clinical practice. BioVU acquires DNA from discarded blood samples collected from routine patient care. The biobank is linked to de-identified clinical data extracted from Vanderbilt's EMR, which forms the basis for phenotype definitions used in genotype-phenotype correlations. *Marshfield Clinic:* The Marshfield Clinic Personalized Medicine Research Project is a population-based biobank in central Wisconsin with more than 20,000 adult subjects who provided written, informed consent to access their medical records and provided a blood sample from which DNA was extracted and plasma and serum stored. In addition to an average of 30 years of medical history data, a questionnaire about environmental exposures, including a detailed food frequency questionnaire, is available to facilitate gene/environment studies. *Northwestern University:* The NUgene Project is a repository with longitudinal medical information from participating patients at affiliated hospitals and outpatient clinics from the Northwestern University Medical Center. Participants' DNA samples are coupled with data from a self-reported questionnaire and continuously updated data from our Electronic Medical Record (EMR) representing actual clinical care events. Northwestern has a state-of-the art, comprehensive inpatient and outpatient EMR system of over 2 million patients. NUgene has broad access to participant data for all outpatient visits as well as inpatient data via a consolidated data warehouse. NUgene participants consent to distribution and use of their coded DNA samples and data for a broad range of genetic research by third-party investigators. *Group Health(GH)/University of Washington (UW):* Aging and Dementia eMERGE study biorepository leverages rich population-based longitudinal data from both electronic medical records and in-depth research data to explore genome wide associations. Participants include Seattle-area members of GH (a large integrated health care system in Washington State) consented and enrolled in 1) the UW Alzheimer's Disease Patient Registry (ADPR) and 2) the Adult Changes in Thought (ACT) study. The ADPR (PI: Eric B. Larson; NIH/NIA U01 AG 006781) is a population-based registry of incident dementia cases designed to identify all new Alzheimer's Disease cases within GH from 1987 to 1996. Medical history, physical, laboratory testing, and neuropsychological testing were performed on all consenting potential cases for determination of dementia status by a consensus conference. The study base of the ADPR population was stable with an attrition rate of less than 1%/year. The ACT study (PI: Eric B. Larson; NIH/NIA U01 AG 006781) is an ongoing community-based cohort study of aging and dementia. The original cohort of 2,581 randomly selected dementia-free members age 65 and older was enrolled in 1994-1996 and expanded by 811 in 2000-2002. Continuous enrollment to maintain a cohort of 2,000 dementia free persons began in 2005. Participants receive biennial assessment including cognitive status determination. The ACT sub-sample is stable; for the original cohort, median enrollment in GH was 19 years prior to joining the ACT study, and 85% of the cohort has ≥10 years of GH enrollment. DNA for the ADPR participants were obtained through a companion study, Genetic Differences in Cases and Controls (PI: Walter Kukull; NIH/NIA R01 AG007584). DNA obtained through both studies were extracted from blood using Gentra Systems Puregene methods. DNA concentration is determined by UV optical density. All samples are checked for quality by 260/280 ratio. For long-term storage, samples are aliquoted and stored at -70°C. *Mayo Clinic:* The Mayo biobank is a disease-specific biobank for vascular diseases including peripheral arterial disease (PAD). PAD patients were identified from individuals referred to the non-invasive vascular laboratory for lower extremity arterial evaluation. Since 1997, laboratory findings have been recorded into an electronic database employing an in-house software package for data archiving and retrieval; this data becomes part of the Mayo EMR. Patients referred to the center with suspected PAD undergo a comprehensive non-invasive evaluation including the ankle-brachial index (ABI) - the ratio of blood pressure measured in the upper arms divided by blood pressure measured at the ankles. Controls subjects are identified from patients referred to the Cardiovascular Health Clinic for stress ECG. The prevalence of PAD in patients with normal exercise capacity who do not have inducible ischemia on the stress ECG, was 1%. Data regarding risk factors for atherosclerosis such as diabetes, dyslipidemia, hypertension, and smoking are ascertained from the EMR.

pht003252.v2.p1

1 Item-grupp 6 Dataelement

pht003251.v2.p1

1 Item-grupp 4 Dataelement

pht003253.v2.p1

1 Item-grupp 6 Dataelement

pht003256.v2.p1

1 Item-grupp 2 Dataelement

pht003254.v3.p1

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pht003255.v2.p1

1 Item-grupp 73 Dataelement

Diabetic Eye Registry National Eye Database (NED) - SECTION 3: OCULAR FINDINGS AT PRESENTATION TO OPHTHALMOLOGY CLINIC

- 20/09/21 - 3 Formulär, 2 Item-grupper, 12 Dataelement, 1 Språk
Item-grupper: Finding ocular Right Eye, Finding ocular Left eye
Diabetic Eye Registry. The National Eye Database (NED) is a service supported by the Ministry of Health (MOH) as an approach to collect health information. It collects data on incidences and distributions, and evaluates risk factors as well as treatment outcome of visually threatening eye diseases such as cataract, diabetic retinopathy, glaucoma and contact lens related corneal ulcer. National Eye Database, Clinical Research Centre, Kepong-Selayang Highway 68100, Batu Caves Selangor.http://www.acrm.org.my/ned/index.htm.

SECTION 1: PATIENTS DEMOGRAPHY AND MEDICAL HISTORY

1 Item-grupp 14 Dataelement

SECTION 2: OCULAR FINDINGS DURING REFERRAL

2 Item-grupper 11 Dataelement

Common Data Elements for Retinal Neovascular Diseases - Risk Factors or Past Medical History

- 20/09/21 - 4 Formulär, 1 Item-grupp, 35 Dataelement, 2 Språk
Item-grupp: Risk Factors; Past Medical History
Common Data Elements for retinal neovascular diseases. The CDEs may be used in clinical routine, clinical trial, patient outcome, quality assurance and registry documentation of Age related macular degeneration (AMD), Diabetic Retinopathy (DR) and Retinal vein occlusion (RVO). The CDEs were developed by the Institute of Medical Informatics of the University Muenster in cooperation with the Department of Ophthalmology of the University Hospital Muenster.

Diagnosis and Examination

1 Item-grupp 11 Dataelement

Eye Examination

1 Item-grupp 18 Dataelement

Therapy

1 Item-grupp 9 Dataelement

Eligibility Retinopathy NCT00969956

- 20/09/21 - 1 Formulär, 1 Item-grupp, 11 Dataelement, 1 Språk
Item-grupp: Inclusion Criteria
Time To Complications Occurs in Diabetes; ODM derived from: https://clinicaltrials.gov/show/NCT00969956

Eligibility NCT01319487 Diabetic Macular Edema - Eligibility

- 20/09/21 - 1 Formulär, 2 Item-grupper, 29 Dataelement, 2 Språk
Item-grupper: Inclusion Criteria, Exclusion Criteria
ODM derived from http://clinicaltrials.gov/show/NCT01319487

Example 1 Discharge Letter Diabetic Retinopathy - Example 1

- 17/09/21 - 2 Formulär, 13 Item-grupper, 44 Dataelement, 1 Språk
Item-grupper: Administrative data, Diagnosis Right eye, Diagnosis Left eye, Vision, Intraocular pressure, Slit lamp biomicroscopy Right eye, Slit lamp biomicroscopy Left eye, Ophthalmoscopy Right eye, Ophthalmoscopy Left eye, SD- OCT Right eye, SD- OCT Left eye, Fluorescein Angiography, Evaluation; Treatment
Routine documentation for Diabetic Retinopathy. Eye clinic, University Clinic of Muenster.

Example 2

0 Item-grupp 0 Dataelement

Eligibility Non-proliferative Diabetic Retinopathy NCT02062034

- 18/11/20 - 1 Formulär, 2 Item-grupper, 17 Dataelement, 1 Språk
Item-grupper: Inclusion Criteria, Exclusion Criteria
Efficacy of Ubiquinone and Combined Antioxidant Therapy in Non-proliferative Diabetic Retinopathy; ODM derived from: https://clinicaltrials.gov/show/NCT02062034

Eligibility Diabetic Retinopathy NCT02232503

- 21/11/19 - 1 Formulär, 2 Item-grupper, 11 Dataelement, 1 Språk
Item-grupper: Inclusion Criteria, Exclusion Criteria
Prevalence of DIAbetic RETinopathy and Impact of Genetic Factors in the Development of Diabetic Retinopathy of Patients With Type 1 and 2 Diabetes Mellitus in SlovaKia; ODM derived from: https://clinicaltrials.gov/show/NCT02232503

Eligibility Diabetic Retinopathy NCT01746563

- 21/11/19 - 1 Formulär, 2 Item-grupper, 15 Dataelement, 1 Språk
Item-grupper: Inclusion Criteria, Exclusion Criteria
Intravitreal Ranibizumab Combined With Panretinal Photocoagulation in Patients With Proliferative Diabetic Retinopathy; ODM derived from: https://clinicaltrials.gov/show/NCT01746563

Eligibility Diabetic Retinopathy NCT00763802

- 13/03/18 - 1 Formulär, 2 Item-grupper, 13 Dataelement, 1 Språk
Item-grupper: Inclusion Criteria, Exclusion Criteria
Validation of a Predictive Model to Estimate the Risk of Conversion to Clinically Significant Macular Edema and/or Vision Loss in Mild Nonproliferative Diabetic Retinopathy in Diabetes Type 2; ODM derived from: https://clinicaltrials.gov/show/NCT00763802

Eligibility Diabetic Retinopathy NCT00704652

- 13/03/18 - 1 Formulär, 2 Item-grupper, 20 Dataelement, 1 Språk
Item-grupper: Inclusion Criteria, Exclusion Criteria
Evaluation of Retinal Changes in Systemic Darbepoetin Alpha Treatment in Patients With Diabetes Mellitus; ODM derived from: https://clinicaltrials.gov/show/NCT00704652

Example 2 Discharge Letter Diabetic Retinopathy - Example 2

- 05/02/18 - 2 Formulär, 12 Item-grupper, 36 Dataelement, 1 Språk
Item-grupper: Administrative data, Diagnosis Both eyes, Diagnosis Left eye, Therapeutic procedures, Vision, Intraocular pressure, Slit lamp biomicroscopy Both eyes, Ophthalmoscopy Right eye, Ophthalmoscopy Left eye, OCT Macula, Fluorescein Angiography, Evaluation; Treatment
Routine documentation for Diabetic Retinopathy. Eye clinic, University Clinic of Muenster.

Example 2

0 Item-grupp 0 Dataelement

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