0 Ratings

ID

45924

Description

Principal Investigator: Janey L. Wiggs, MD PhD, Massachusetts Eye and Ear, Harvard Medical School, Boston MA USA MeSH: Glaucoma,Exfoliation Syndrome https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs001053 The overall goal of our research is to elucidate the pathogenesis of exfoliation syndrome and the associated glaucoma, making it possible to implement effective screening and prevention strategies and to develop novel therapies. Cases genotyped for this project are from the Nurses Health Study (NHS), the Health Professionals Follow-up Study (HPFS), the Women's Genome Health Study (WGHS), the Massachusetts Eye and Ear Infirmary (MEEI), Mayo Clinic, the University of Iowa, the University of Miami and Duke University Medical Center. Exfoliation syndrome (XFS) is a common condition that is a major risk factor for high-tension open-angle glaucoma, pre-mature cataract formation, and increased risk of complications during cataract surgery. Previous studies suggest that exfoliation syndrome and the related glaucoma (XFG) are genetically complex, and one gene, LOXL1, has been identified as a major genetic risk factor. LOXL1 variants are found in up to 98% of affected patients; however, these same variants are also present in up to 80% of unaffected individuals, indicating that additional genetic and/or environmental factors are necessary for disease development. Samples genotyped for this study are a case set (1,096 samples) and 24 pedigrees (98 samples). Controls for association analyses are selected from the NEIGHBORHOOD study.

Link

dbGaP study = phs001053

Keywords

  1. 2/27/24 2/27/24 - Simon Heim
Copyright Holder

Janey L. Wiggs, MD PhD, Massachusetts Eye and Ear, Harvard Medical School, Boston MA USA

Uploaded on

February 27, 2024

DOI

To request one please log in.

License

Creative Commons BY 4.0

Model comments :

You can comment on the data model here. Via the speech bubbles at the itemgroups and items you can add comments to those specificially.

Itemgroup comments for :

Item comments for :


    No comments

    In order to download data models you must be logged in. Please log in or register for free.

    dbGaP phs001053 NEI Exfoliation Genotyping Study

    Subject ID, family ID, father ID, mother ID, and superfamily variable of participants with exfoliation syndrome and involved in the "National Eye Institute (NEI) Exfoliation Genotyping Study" project.

    pht007230
    Description

    pht007230

    Alias
    UMLS CUI [1,1]
    C3846158 (Other Coding)
    LOINC
    LA4728-7
    Family identifier
    Description

    FAMILY_ID

    Data type

    string

    Alias
    UMLS CUI [1,1]
    C3669174 (Family pedigree identifier)
    LOINC
    LP173549-9
    Subject level identifier
    Description

    SUBJECT_ID

    Data type

    string

    Alias
    UMLS CUI [1,1]
    C2348585 (Clinical Trial Subject Unique Identifier)
    Father ID
    Description

    FATHER

    Data type

    string

    Alias
    UMLS CUI [1,1]
    C3669177 (Father identifier)
    LOINC
    MTHU047348
    UMLS CUI [1,2]
    C0030761 (genetic pedigree)
    Mother ID
    Description

    MOTHER

    Data type

    string

    Alias
    UMLS CUI [1,1]
    C3669352 (Mother identifier)
    LOINC
    MTHU047347
    UMLS CUI [1,2]
    C0030761 (genetic pedigree)
    Sex
    Description

    SEX

    Data type

    text

    Alias
    UMLS CUI [1,1]
    C0079399 (Gender)
    SNOMED
    263495000
    LOINC
    LP61312-2
    Superfamily identifier
    Description

    SUPERFAMILY

    Data type

    string

    Alias
    UMLS CUI [1,1]
    C3669174 (Family pedigree identifier)
    LOINC
    LP173549-9

    Similar models

    Subject ID, family ID, father ID, mother ID, and superfamily variable of participants with exfoliation syndrome and involved in the "National Eye Institute (NEI) Exfoliation Genotyping Study" project.

    Name
    Type
    Description | Question | Decode (Coded Value)
    Data type
    Alias
    Item Group
    pht007230
    C3846158 (UMLS CUI [1,1])
    FAMILY_ID
    Item
    Family identifier
    string
    C3669174 (UMLS CUI [1,1])
    SUBJECT_ID
    Item
    Subject level identifier
    string
    C2348585 (UMLS CUI [1,1])
    FATHER
    Item
    Father ID
    string
    C3669177 (UMLS CUI [1,1])
    C0030761 (UMLS CUI [1,2])
    MOTHER
    Item
    Mother ID
    string
    C3669352 (UMLS CUI [1,1])
    C0030761 (UMLS CUI [1,2])
    Item
    Sex
    text
    C0079399 (UMLS CUI [1,1])
    Code List
    Sex
    CL Item
    Male (1)
    C0086582 (UMLS CUI [1,1])
    CL Item
    Female (2)
    C0086287 (UMLS CUI [1,1])
    SUPERFAMILY
    Item
    Superfamily identifier
    string
    C3669174 (UMLS CUI [1,1])

    Do you need help on how to use the search function? Please watch the corresponding tutorial video for more details and learn how to use the search function most efficiently.

    Watch Tutorial