ID

45749

Description

Principal Investigator: MeSH: Pediatrics https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs001165 The Center for Applied Genomics (CAG) is a specialized Center of Emphasis at the Children's Hospital of Philadelphia (CHOP) with the primary goal of translating basic research findings to medical innovations. The mission of CAG is to develop new and better ways to diagnose and treat children affected by rare and complex medical disorders. We aim to discover genetic causes for the most prevalent diseases of childhood including asthma, autism, diabetes, epilepsy, obesity, schizophrenia, pediatric cancer, and a range of rare diseases. Ultimately, our objective is to generate new diagnostic tests and to guide physicians to the most appropriate therapies. The CAG is one of the world's largest genetics research programs in pediatrics, and the only center at a pediatric hospital to have established a large-scale biobank of genotyped samples. The electronic Medical Records and Genomics (eMERGE) Network is a consortium of 9 clinical sites with EMR linked DNA biobanks, including Northwestern University and its NUgene biobank, funded by the NHGRI (National Human Genome Research Institute) to investigate the use of electronic medical record systems for genomic research. The goal of eMERGE is to conduct genome-wide association studies in approximately 100,000 individuals using EMR-derived phenotypes and DNA from linked biorepositories. Using electronic phenotyping methods, the consortium has been and is using DNA samples from all participating sites to explore the genetic determinants of approximately 80 phenotypes, including both diseases and traits, for which the electronic phenotyping algorithms have or are being published on PheKB.org.

Link

dbGaP-study=phs001165

Keywords

  1. 6/4/23 6/4/23 - Chiara Middel
Copyright Holder

Hakon Hakonarson, MD, PhD

Uploaded on

June 4, 2023

DOI

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License

Creative Commons BY 4.0

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dbGaP phs001165 eMERGE: Children's Hospital of Philadelphia - WGS

Sample Attribute Information

pht007988
Description

pht007988

Alias
UMLS CUI [1,1]
C3846158
Sample ID
Description

SAMPID

Data type

string

Alias
UMLS CUI [1,1]
C1299222
Type of sample
Description

HISTOLOGICAL_TYPE

Data type

string

Alias
UMLS CUI [1,1]
C2347029
Sample nucleic acid type
Description

ANALYTE_TYPE

Data type

string

Alias
UMLS CUI [1,1]
C2347029
UMLS CUI [1,2]
C0028606
Body site from where sample was collected
Description

BODY_SITE

Data type

string

Alias
UMLS CUI [1,1]
C0449705
Tumor status of the sample
Description

IS_TUMOR

Data type

string

Alias
UMLS CUI [1,1]
C0475752

Similar models

Sample Attribute Information

Name
Type
Description | Question | Decode (Coded Value)
Data type
Alias
Item Group
pht007988
C3846158 (UMLS CUI [1,1])
SAMPID
Item
Sample ID
string
C1299222 (UMLS CUI [1,1])
HISTOLOGICAL_TYPE
Item
Type of sample
string
C2347029 (UMLS CUI [1,1])
ANALYTE_TYPE
Item
Sample nucleic acid type
string
C2347029 (UMLS CUI [1,1])
C0028606 (UMLS CUI [1,2])
BODY_SITE
Item
Body site from where sample was collected
string
C0449705 (UMLS CUI [1,1])
Item
Tumor status of the sample
string
C0475752 (UMLS CUI [1,1])
Code List
Tumor status of the sample
CL Item
No tumor (no)

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