0 Ratings

ID

45631

Description

Principal Investigator: Sharon L.R. Kardia, PhD, University of Michigan, Ann Arbor, MI, USA MeSH: Hypertension,Aging,Arterial Pressure,Arteriosclerosis,Atherosclerosis,Biomarkers,Blood Pressure,Cardiovascular Diseases,Cholesterol,Cholesterol, HDL,Cholesterol, LDL,Coronary Artery Disease,Diabetes Mellitus,Echocardiography,Endophenotypes,Hyperglycemia,Hyperinsulinism,Hypertrophy, Left Ventricular,Inflammation,Kidney Failure, Chronic,Leukoaraiosis,Lipids,Obesity,Obesity, Abdominal,Peripheral Arterial Disease,Renal Insufficiency, Chronic,Triglycerides,Vascular Calcification https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs001345 The Genetic Epidemiology Network of Arteriopathy (GENOA) is one of four networks in the NHLBI Family-Blood Pressure Program (FBPP). GENOA's long-term objective is to elucidate the genetics of target organ complications of hypertension, including both atherosclerotic and arteriolosclerotic complications involving the heart, brain, kidneys, and peripheral arteries. The longitudinal GENOA Study recruited European-American and African-American sibships with at least 2 individuals with clinically diagnosed essential hypertension before age 60 years. All other members of the sibship were invited to participate regardless of their hypertension status. Participants were diagnosed with hypertension if they had either 1) a previous clinical diagnosis of hypertension by a physician with current anti-hypertensive treatment, or 2) an average systolic blood pressure = 140 mm Hg or diastolic blood pressure = 90 mm Hg based on the second and third readings at the time of their clinic visit. Only participants of the African-American Cohort were sequenced through TOPMed. The Family Blood Pressure Program (FBPP), GENOA's parent program, is an unprecedented collaboration to identify genes influencing blood pressure (BP) levels, hypertension, and its target-organ damage. This program has conducted over 21,000 physical examinations, assembled a shared database of several hundred BP and hypertension-related phenotypic measurements, completed genome-wide linkage analyses for BP, hypertension, and hypertension associated risk factors and complications, and published over 130 manuscripts on program findings. The FBPP emerged from what was initially funded as four independent networks of investigators (HyperGEN, GenNet, SAPPHIRe and GENOA) competing to identify genetic determinants of hypertension in multiple ethnic groups. Realizing the greater likelihood of success through collaboration, the investigators created a single confederation with program-wide and network-specific goals. Comprehensive phenotypic data for GENOA study participants are available through dbGaP phs001238.

Link

dbGaP study = phs001345

Keywords

  1. 3/5/23 3/5/23 - Simon Heim
Copyright Holder

Sharon L.R. Kardia, PhD, University of Michigan, Ann Arbor, MI, USA

Uploaded on

March 5, 2023

DOI

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License

Creative Commons BY 4.0

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    dbGaP phs001345 NHLBI TOPMed: Genetic Epidemiology Network of Arteriopathy (GENOA)

    This sample attributes table includes body site where sample was collected, analyte type, histological type, tumor status, sequencing center, funding source, TOPMed phase, project, and study name.

    pht008604
    Description

    pht008604

    Alias
    UMLS CUI [1,1]
    C3846158
    De-identified Sample Identifier
    Description

    SAMPLE_ID

    Data type

    string

    Alias
    UMLS CUI [1,1]
    C4684638
    UMLS CUI [1,2]
    C5237951
    Body site where sample was collected
    Description

    BODY_SITE

    Data type

    string

    Alias
    UMLS CUI [1,1]
    C0449705
    UMLS CUI [1,2]
    C0200345
    Analyte Type
    Description

    ANALYTE_TYPE

    Data type

    string

    Alias
    UMLS CUI [1,1]
    C4744818
    Name of the center which conducted sequencing
    Description

    SEQUENCING_CENTER

    Data type

    string

    Alias
    UMLS CUI [1,1]
    C1301943
    UMLS CUI [1,2]
    C5575037
    UMLS CUI [1,3]
    C1561491
    Cell or tissue type or subtype of sample
    Description

    HISTOLOGICAL_TYPE

    Data type

    string

    Alias
    UMLS CUI [1,1]
    C2347026
    UMLS CUI [1,2]
    C0007634
    UMLS CUI [1,3]
    C0332307
    UMLS CUI [2,1]
    C2347026
    UMLS CUI [2,2]
    C0007634
    UMLS CUI [2,3]
    C0449560
    UMLS CUI [3,1]
    C1292533
    UMLS CUI [3,2]
    C0332307
    UMLS CUI [4,1]
    C1292533
    UMLS CUI [4,2]
    C0449560
    Tumor status
    Description

    IS_TUMOR

    Data type

    text

    Alias
    UMLS CUI [1,1]
    C0475752
    Project funding source
    Description

    Funding_Source

    Data type

    string

    Alias
    UMLS CUI [1,1]
    C0243098
    UMLS CUI [1,2]
    C0449416
    TOPMed Phase
    Description

    TOPMed_Phase

    Data type

    text

    Alias
    UMLS CUI [1,1]
    C0205390
    UMLS CUI [1,2]
    C3846158
    TOPMed Project that funded sequencing
    Description

    TOPMed_Project

    Data type

    string

    Alias
    UMLS CUI [1,1]
    C3846158
    UMLS CUI [1,2]
    C1709701
    UMLS CUI [1,3]
    C0243098
    UMLS CUI [1,4]
    C1561491
    TOPMed-assigned short study name (1:1 with TOPMed phs number)
    Description

    Study_Name

    Data type

    string

    Alias
    UMLS CUI [1,1]
    C3846158
    UMLS CUI [1,2]
    C2348560

    Similar models

    This sample attributes table includes body site where sample was collected, analyte type, histological type, tumor status, sequencing center, funding source, TOPMed phase, project, and study name.

    Name
    Type
    Description | Question | Decode (Coded Value)
    Data type
    Alias
    Item Group
    pht008604
    C3846158 (UMLS CUI [1,1])
    SAMPLE_ID
    Item
    De-identified Sample Identifier
    string
    C4684638 (UMLS CUI [1,1])
    C5237951 (UMLS CUI [1,2])
    BODY_SITE
    Item
    Body site where sample was collected
    string
    C0449705 (UMLS CUI [1,1])
    C0200345 (UMLS CUI [1,2])
    ANALYTE_TYPE
    Item
    Analyte Type
    string
    C4744818 (UMLS CUI [1,1])
    SEQUENCING_CENTER
    Item
    Name of the center which conducted sequencing
    string
    C1301943 (UMLS CUI [1,1])
    C5575037 (UMLS CUI [1,2])
    C1561491 (UMLS CUI [1,3])
    HISTOLOGICAL_TYPE
    Item
    Cell or tissue type or subtype of sample
    string
    C2347026 (UMLS CUI [1,1])
    C0007634 (UMLS CUI [1,2])
    C0332307 (UMLS CUI [1,3])
    C2347026 (UMLS CUI [2,1])
    C0007634 (UMLS CUI [2,2])
    C0449560 (UMLS CUI [2,3])
    C1292533 (UMLS CUI [3,1])
    C0332307 (UMLS CUI [3,2])
    C1292533 (UMLS CUI [4,1])
    C0449560 (UMLS CUI [4,2])
    Item
    Tumor status
    text
    C0475752 (UMLS CUI [1,1])
    Code List
    Tumor status
    CL Item
    Is not tumor (N)
    CL Item
    Is tumor (Y)
    C0027651 (UMLS CUI [1,1])
    Funding_Source
    Item
    Project funding source
    string
    C0243098 (UMLS CUI [1,1])
    C0449416 (UMLS CUI [1,2])
    TOPMed_Phase
    Item
    TOPMed Phase
    text
    C0205390 (UMLS CUI [1,1])
    C3846158 (UMLS CUI [1,2])
    TOPMed_Project
    Item
    TOPMed Project that funded sequencing
    string
    C3846158 (UMLS CUI [1,1])
    C1709701 (UMLS CUI [1,2])
    C0243098 (UMLS CUI [1,3])
    C1561491 (UMLS CUI [1,4])
    Study_Name
    Item
    TOPMed-assigned short study name (1:1 with TOPMed phs number)
    string
    C3846158 (UMLS CUI [1,1])
    C2348560 (UMLS CUI [1,2])

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