ID

45617

Beskrivning

Principal Investigator: Donna Arnett, PhD, College of Public Health, University of Kentucky, Lexington, KY, USA MeSH: Lipids,Cardiovascular Diseases,Acute-Phase Proteins,Glucose Metabolism Disorders,Blood Pressure,Body Mass Index,Adiponectin https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs001359 The GOLDN study was initiated to assess how genetic factors interact with environmental (diet and drug) interventions to influence blood levels of triglycerides and other atherogenic lipid species and inflammation markers (registered at clinicaltrials.gov, number NCT00083369). The study recruited Caucasian participants primarily from three-generational pedigrees from two NHLBI Family Heart Study (FHS) field centers (Minneapolis, MN and Salt Lake City, UT). Only families with at least two siblings were recruited and only participants who did not take lipid-lowering agents (pharmaceuticals or nutraceuticals) for at least 4 weeks prior to the initial visit were included. The diet intervention followed the protocol of Patsch et al. (1992). The whipping cream (83% fat) meal had 700 Calories/m2 body surface area (2.93 mJ/m2 body surface area): 3% of calories were derived from protein (instant nonfat dry milk) and 14% from carbohydrate (sugar). The ratio of polyunsaturated to saturated fat was 0.06 and the cholesterol content of the average meal was 240 mg. The mixture was blended with ice and flavorings. Blood samples were drawn immediately before (fasting) and at 3.5 and 6 hours after consuming the high-fat meal. The diet intervention was administered at baseline as well as after a 3-week treatment with 160 mg micronized fenofibrate. Participants were given the option to complete one or both (diet and drug) interventions. Of all participants, 1079 had phenotypic data and provided appropriate consent, and underwent whole genome sequencing through the Trans-Omics for Precision Medicine (TOPMed) program. Comprehensive phenotypic and pedigree data for GOLDN study participants are available through dbGaP phs000741.

Länk

dbGaP study = phs001359

Nyckelord

  1. 2023-02-26 2023-02-26 - Simon Heim
Rättsinnehavare

Donna Arnett, PhD, College of Public Health, University of Kentucky, Lexington, KY, USA

Uppladdad den

26 februari 2023

DOI

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Licens

Creative Commons BY 4.0

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dbGaP phs001359 NHLBI TOPMed: GOLDN Epigenetic Determinants of Lipid Response to Dietary Fat and Fenofibrate

This sample attributes table includes body site where sample was collected, analyte type, tumor status, sequencing center, funding source, TOPMed phase, project, and study name.

pht008690
Beskrivning

pht008690

Alias
UMLS CUI [1,1]
C3846158
De-identified Sample ID
Beskrivning

SAMPLE_ID

Datatyp

string

Alias
UMLS CUI [1,1]
C4684638
UMLS CUI [1,2]
C1299222
Body site where sample was collected
Beskrivning

BODY_SITE

Datatyp

string

Alias
UMLS CUI [1,1]
C0449705
Analyte Type
Beskrivning

ANALYTE_TYPE

Datatyp

string

Alias
UMLS CUI [1,1]
C4744818
Whether or not sample came from a tumor tissue
Beskrivning

IS_TUMOR

Datatyp

string

Alias
UMLS CUI [1,1]
C2347026
UMLS CUI [1,2]
C0027651
UMLS CUI [1,3]
C1518422
Name of the center which conducted sequencing
Beskrivning

SEQUENCING_CENTER

Datatyp

string

Alias
UMLS CUI [1,1]
C0027365
UMLS CUI [1,2]
C5575037
UMLS CUI [1,3]
C1561491
Project funding source
Beskrivning

Funding_Source

Datatyp

string

Alias
UMLS CUI [1,1]
C0681806
TOPMed Phase
Beskrivning

TOPMed_Phase

Datatyp

text

Alias
UMLS CUI [1,1]
C0205390
UMLS CUI [1,2]
C3846158
TOPMed Project that funded sequencing
Beskrivning

Study_Name

Datatyp

string

Alias
UMLS CUI [1,1]
C1515883
UMLS CUI [1,2]
C1561491
UMLS CUI [1,3]
C3846158
TOPMed-assigned short study name (1:1 with TOPMed phs number)
Beskrivning

TOPMed_Project

Datatyp

string

Alias
UMLS CUI [1,1]
C3846158
UMLS CUI [1,2]
C3887423
UMLS CUI [1,3]
C2348560

Similar models

This sample attributes table includes body site where sample was collected, analyte type, tumor status, sequencing center, funding source, TOPMed phase, project, and study name.

Name
Typ
Description | Question | Decode (Coded Value)
Datatyp
Alias
Item Group
pht008690
C3846158 (UMLS CUI [1,1])
SAMPLE_ID
Item
De-identified Sample ID
string
C4684638 (UMLS CUI [1,1])
C1299222 (UMLS CUI [1,2])
BODY_SITE
Item
Body site where sample was collected
string
C0449705 (UMLS CUI [1,1])
ANALYTE_TYPE
Item
Analyte Type
string
C4744818 (UMLS CUI [1,1])
IS_TUMOR
Item
Whether or not sample came from a tumor tissue
string
C2347026 (UMLS CUI [1,1])
C0027651 (UMLS CUI [1,2])
C1518422 (UMLS CUI [1,3])
SEQUENCING_CENTER
Item
Name of the center which conducted sequencing
string
C0027365 (UMLS CUI [1,1])
C5575037 (UMLS CUI [1,2])
C1561491 (UMLS CUI [1,3])
Funding_Source
Item
Project funding source
string
C0681806 (UMLS CUI [1,1])
TOPMed_Phase
Item
TOPMed Phase
text
C0205390 (UMLS CUI [1,1])
C3846158 (UMLS CUI [1,2])
Study_Name
Item
TOPMed Project that funded sequencing
string
C1515883 (UMLS CUI [1,1])
C1561491 (UMLS CUI [1,2])
C3846158 (UMLS CUI [1,3])
TOPMed_Project
Item
TOPMed-assigned short study name (1:1 with TOPMed phs number)
string
C3846158 (UMLS CUI [1,1])
C3887423 (UMLS CUI [1,2])
C2348560 (UMLS CUI [1,3])

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