ID

45610

Description

Principal Investigator: Bruce M. Psaty, MD, PhD, TOPMed Cardiovascular Health Study Project (TOPMed-CHS). University of Washington, Seattle, WA, USA MeSH: Cardiovascular Diseases,Myocardial Infarction,Stroke,Brain Ischemia,Intracranial Hemorrhage,Venous Thromboembolism,Venous Thrombosis,Pulmonary Embolism https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs001368 Participants from the Cardiovascular Health Study (CHS), a large population-based longitudinal cohort study (phs000287), have been included in the TOPMed project. Whole genome sequencing will be performed to contribute to multiple analyses, including cardiovascular disease risk factors, subclinical disease measures, the occurrence of myocardial infarction (MI) and stroke, and analyses of venous thromboembolism (VTE).

Link

dbGaP-study=phs001368

Keywords

  1. 2/21/23 2/21/23 - Chiara Middel
Copyright Holder

Bruce M. Psaty, MD, PhD, TOPMed Cardiovascular Health Study Project (TOPMed-CHS). University of Washington, Seattle, WA, USA

Uploaded on

February 21, 2023

DOI

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License

Creative Commons BY 4.0

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dbGaP phs001368 NHLBI TOPMed: Trans-Omics for Precision Medicine (TOPMed) Whole Genome Sequencing Project: Cardiovascular Health Study

This sample attributes data table includes sample IDs, body site where sample was collected, histological type, analyte type, tumor status, sequencing center, funding source, TOPMed phase, project, study name, blood draw visit, and sampling groups.

pht007959
Description

pht007959

Alias
UMLS CUI [1,1]
C3846158
De-identified Sample ID
Description

SAMPLE_ID

Data type

string

Alias
UMLS CUI [1,1]
C4684638
UMLS CUI [1,2]
C1299222
Body site where sample was collected
Description

BODY_SITE

Data type

string

Alias
UMLS CUI [1,1]
C0449705
Type of sample
Description

HISTOLOGICAL_TYPE

Data type

string

Alias
UMLS CUI [1,1]
C2347029
Analyte Type
Description

ANALYTE_TYPE

Data type

string

Alias
UMLS CUI [1,1]
C4744818
Tumor status
Description

IS_TUMOR

Data type

text

Measurement units
  • values
Alias
UMLS CUI [1,1]
C0475752
Name of the center which conducted sequencing
Description

SEQUENCING_CENTER

Data type

string

Alias
UMLS CUI [1,1]
C1301943
UMLS CUI [1,2]
C0565990
UMLS CUI [1,3]
C1561491
Project funding source
Description

Funding_Source

Data type

string

Alias
UMLS CUI [1,1]
C1709701
UMLS CUI [1,2]
C0243098
UMLS CUI [1,3]
C0449416
TOPMed Phase
Description

TOPMed_Phase

Data type

text

Alias
UMLS CUI [1,1]
C0205390
TOPMed Project that funded sequencing
Description

TOPMed_Project

Data type

string

Alias
UMLS CUI [1,1]
C1709701
UMLS CUI [1,2]
C0243098
UMLS CUI [1,3]
C1561491
TOPMed-assigned short study name
Description

Study_Name

Data type

string

Alias
UMLS CUI [1,1]
C1629065
Follow-up visit of blood draw for TOPMed specimen
Description

BloodDrawVisit

Data type

text

Alias
UMLS CUI [1,1]
C3694716
UMLS CUI [1,2]
C0005834
Subject sampling groups
Description

Sampling_Group

Data type

text

Alias
UMLS CUI [1,1]
C0870078
UMLS CUI [1,2]
C0441833

Similar models

This sample attributes data table includes sample IDs, body site where sample was collected, histological type, analyte type, tumor status, sequencing center, funding source, TOPMed phase, project, study name, blood draw visit, and sampling groups.

Name
Type
Description | Question | Decode (Coded Value)
Data type
Alias
Item Group
pht007959
C3846158 (UMLS CUI [1,1])
SAMPLE_ID
Item
De-identified Sample ID
string
C4684638 (UMLS CUI [1,1])
C1299222 (UMLS CUI [1,2])
BODY_SITE
Item
Body site where sample was collected
string
C0449705 (UMLS CUI [1,1])
HISTOLOGICAL_TYPE
Item
Type of sample
string
C2347029 (UMLS CUI [1,1])
ANALYTE_TYPE
Item
Analyte Type
string
C4744818 (UMLS CUI [1,1])
Item
Tumor status
text
C0475752 (UMLS CUI [1,1])
Code List
Tumor status
CL Item
Is not a tumor (N)
C0027651 (UMLS CUI [1,1])
C1518422 (UMLS CUI [1,2])
CL Item
Is Tumor (Y)
C0027651 (UMLS CUI [1,1])
SEQUENCING_CENTER
Item
Name of the center which conducted sequencing
string
C1301943 (UMLS CUI [1,1])
C0565990 (UMLS CUI [1,2])
C1561491 (UMLS CUI [1,3])
Funding_Source
Item
Project funding source
string
C1709701 (UMLS CUI [1,1])
C0243098 (UMLS CUI [1,2])
C0449416 (UMLS CUI [1,3])
TOPMed_Phase
Item
TOPMed Phase
text
C0205390 (UMLS CUI [1,1])
TOPMed_Project
Item
TOPMed Project that funded sequencing
string
C1709701 (UMLS CUI [1,1])
C0243098 (UMLS CUI [1,2])
C1561491 (UMLS CUI [1,3])
Study_Name
Item
TOPMed-assigned short study name
string
C1629065 (UMLS CUI [1,1])
BloodDrawVisit
Item
Follow-up visit of blood draw for TOPMed specimen
text
C3694716 (UMLS CUI [1,1])
C0005834 (UMLS CUI [1,2])
Item
Subject sampling groups
text
C0870078 (UMLS CUI [1,1])
C0441833 (UMLS CUI [1,2])
Code List
Subject sampling groups
CL Item
Venous Thromboembolism sample (1)
CL Item
African American sample (2)
CL Item
Incident MI or Definite Fatal CHD sample (3)
CL Item
Probable Fatal CHD sample (4)
CL Item
Incident Stroke sample (5)
CL Item
Prevalent MI/Stroke sample (6)
CL Item
Healthy Elderly sample (7)
CL Item
Other (8)

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