ID

45480

Description

Principal Investigator: Markku Laakso, MD, PhD, University of Eastern Finland and Kuopio University Hospital, Kuopio, Finland MeSH: Metabolic Syndrome,Diabetes Mellitus, Type 2,Cardiovascular Diseases https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs000743 The METSIM Study includes 10,197 men, aged from 45 to 73 years, randomly selected from the population register of the town of Kuopio, Eastern Finland, and examined in 2005-2010. The aim of the study is to investigate genetic and non-genetic factors associated with the risk of type 2 diabetes (T2D), cardiovascular disease (CVD), and insulin resistance-related traits in a cross-sectional and longitudinal setting. Study protocol includes collection of data on CVD risk factors (smoking, exercise, diet, history of chronic diseases including coronary heart disease, stroke, cardiac failure, medication, history of diabetes or early onset coronary heart disease in the family), questionnaire on the FINDRISC Score, measurement of height, weight, waist, hip, blood pressure, and bioimpedance for the evaluation of fat percentage. July 2016 - This first study release includes phenotype and whole exome sequencing data of n=982 participants in substudy: Type 2 Diabetes Genetic Exploration by Next-Generation Sequencing in Multi-Ethnic Samples (T2D-GENES) Project 1: Metabolic Syndrome in Men Study (METSIM) - phs001100.v2.p1. The second release (v2) includes phenotype data for the entire METSIM cohort and makes two additional substudies available, phs000919.v1.p1 and phs000752.v1.p1. *The METSIM Study v2 is utilized in the following dbGaP sub-studies.* To view genotypes, other molecular data, and derived variables collected in these sub-studies, please click on the following sub-studies below or in the "Sub-studies" section of this top-level study page phs000743.v2.p1 METSIM Study v2. - phs000752 METSIM FinMetSeq Exome Sequencing - phs000919 METSIM GWAS and Exome Chip - phs001100 METSIM T2D-GENES Exome Sequencing

Link

dbGaP-study=phs000743

Keywords

  1. 12/13/22 12/13/22 - Chiara Middel
Copyright Holder

Markku Laakso, MD, PhD, University of Eastern Finland and Kuopio University Hospital, Kuopio, Finland

Uploaded on

December 13, 2022

DOI

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License

Creative Commons BY 4.0

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dbGaP phs000743 METSIM (METabolic Syndrome In Men) Study

Subject ID, age, plasma adiponectin, blood pressure, cholesterol, C-peptide, creatinine, diabetes, glucose, GHbA1C, GAD antibodies, insulin, triglycerides, weight, height, BMI, waist circumference and medications of participants in the "METSIM (METabolic Syndrome In Men) Study" project.

pht005603
Description

pht005603

Alias
UMLS CUI [1,1]
C3846158
Subject ID
Description

SUBJECT_ID

Data type

text

Alias
UMLS CUI [1,1]
C2348585
Sex
Description

sex

Data type

text

Alias
UMLS CUI [1,1]
C0079399
Age at METSIM baseline visit
Description

studyage

Data type

float

Measurement units
  • years
Alias
UMLS CUI [1,1]
C0001779
UMLS CUI [1,2]
C1442488
UMLS CUI [1,3]
C0545082
years
Type of diabetes
Description

dmtype

Data type

text

Alias
UMLS CUI [1,1]
C0332307
UMLS CUI [1,2]
C0011849
Glucose tolerance according to WHO 1997
Description

gltol6_1

Data type

text

Alias
UMLS CUI [1,1]
C0178665
Age of onset of diabetes
Description

aoo

Data type

text

Measurement units
  • years
Alias
UMLS CUI [1,1]
C0001779
UMLS CUI [1,2]
C0574845
UMLS CUI [1,3]
C0011849
years
OGTT fasting plasma glucose
Description

glu_fast

Data type

float

Measurement units
  • mmol/l
Alias
UMLS CUI [1,1]
C0029161
UMLS CUI [1,2]
C0583513
mmol/l
OGTT fasting plasma insulin
Description

ins_fast

Data type

float

Measurement units
  • pmol/l
Alias
UMLS CUI [1,1]
C0029161
UMLS CUI [1,2]
C0015663
UMLS CUI [1,3]
C0857690
pmol/l
Serum C-peptide
Description

cpep_fast

Data type

float

Measurement units
  • nmol/l
Alias
UMLS CUI [1,1]
C0006558
UMLS CUI [1,2]
C0229671
nmol/l
OGTT 120 min plasma glucose
Description

glu_2h

Data type

float

Measurement units
  • mmol/l
Alias
UMLS CUI [1,1]
C0202042
UMLS CUI [1,2]
C0029161
UMLS CUI [1,3]
C0429928
UMLS CUI [1,4]
C1292425
mmol/l
OGTT 120 min plasma insulin
Description

ins_2h

Data type

float

Measurement units
  • pmol/l
Alias
UMLS CUI [1,1]
C0029161
UMLS CUI [1,2]
C0429928
UMLS CUI [1,3]
C1292425
UMLS CUI [1,4]
C0032105
UMLS CUI [1,5]
C0021641
pmol/l
Blood GHbA1C
Description

hba1c

Data type

float

Measurement units
  • %
Alias
UMLS CUI [1,1]
C0019018
%
Plasma adiponectin
Description

p_adipon

Data type

float

Measurement units
  • ug/ml
Alias
UMLS CUI [1,1]
C0032105
UMLS CUI [1,2]
C2700366
ug/ml
Serum GAD antibodies
Description

s_gadab

Data type

float

Measurement units
  • U/ml
Alias
UMLS CUI [1,1]
C0229671
UMLS CUI [1,2]
C0443891
U/ml
Creatinine
Description

s_krea

Data type

text

Measurement units
  • umol/l
Alias
UMLS CUI [1,1]
C0201976
umol/l
Total cholesterol
Description

chol

Data type

float

Measurement units
  • mmol/l
Alias
UMLS CUI [1,1]
C0543421
mmol/l
LDL cholesterol
Description

ldl

Data type

float

Measurement units
  • mmol/l
Alias
UMLS CUI [1,1]
C0428474
mmol/l
HDL cholesterol
Description

hdl

Data type

float

Measurement units
  • mmol/l
Alias
UMLS CUI [1,1]
C0428472
mmol/l
Total triglycerides
Description

tg

Data type

float

Measurement units
  • mmol/l
Alias
UMLS CUI [1,1]
C0202236
mmol/l
Height
Description

height

Data type

float

Measurement units
  • cm
Alias
UMLS CUI [1,1]
C0005890
cm
Weight
Description

weight

Data type

float

Measurement units
  • kg
Alias
UMLS CUI [1,1]
C0005910
kg
Body mass index
Description

bmi

Data type

float

Measurement units
  • kg/m^2
Alias
UMLS CUI [1,1]
C1305855
kg/m^2
Hip circumference
Description

hip

Data type

float

Measurement units
  • cm
Alias
UMLS CUI [1,1]
C0562350
cm
Waist circumference
Description

waist

Data type

float

Measurement units
  • cm
Alias
UMLS CUI [1,1]
C0455829
cm
Systolic blood pressure
Description

sbp

Data type

float

Measurement units
  • mmHg
Alias
UMLS CUI [1,1]
C0871470
mmHg
Diastolic blood pressure
Description

dbp

Data type

float

Measurement units
  • mmHg
Alias
UMLS CUI [1,1]
C0428883
mmHg
Use of blood pressure medication
Description

bpmeds

Data type

text

Alias
UMLS CUI [1,1]
C0005823
UMLS CUI [1,2]
C0013227
Use of lipid medication
Description

lipidmeds

Data type

text

Alias
UMLS CUI [1,1]
C0585943
Use of diabetes medication
Description

diabmeds

Data type

text

Alias
UMLS CUI [1,1]
C0935929
Consortium name
Description

consortium

Data type

string

Alias
UMLS CUI [1,1]
C1880171
UMLS CUI [1,2]
C0027365
T2D-GENES cohort name
Description

cohort

Data type

string

Alias
UMLS CUI [1,1]
C0599755
UMLS CUI [1,2]
C0027365

Similar models

Subject ID, age, plasma adiponectin, blood pressure, cholesterol, C-peptide, creatinine, diabetes, glucose, GHbA1C, GAD antibodies, insulin, triglycerides, weight, height, BMI, waist circumference and medications of participants in the "METSIM (METabolic Syndrome In Men) Study" project.

Name
Type
Description | Question | Decode (Coded Value)
Data type
Alias
Item Group
pht005603
C3846158 (UMLS CUI [1,1])
SUBJECT_ID
Item
Subject ID
text
C2348585 (UMLS CUI [1,1])
Item
Sex
text
C0079399 (UMLS CUI [1,1])
Code List
Sex
CL Item
Female (F)
C0086287 (UMLS CUI [1,1])
CL Item
Male (M)
C0086582 (UMLS CUI [1,1])
studyage
Item
Age at METSIM baseline visit
float
C0001779 (UMLS CUI [1,1])
C1442488 (UMLS CUI [1,2])
C0545082 (UMLS CUI [1,3])
Item
Type of diabetes
text
C0332307 (UMLS CUI [1,1])
C0011849 (UMLS CUI [1,2])
Code List
Type of diabetes
CL Item
No DM (0)
CL Item
T1DM (1)
CL Item
T2DM (2)
Item
Glucose tolerance according to WHO 1997
text
C0178665 (UMLS CUI [1,1])
Code List
Glucose tolerance according to WHO 1997
CL Item
NGT (0)
CL Item
Isolated IFG (1)
CL Item
Isolated IGT (2)
CL Item
IFG & IGT (3)
CL Item
T1DM (4)
CL Item
New T2DM (5)
CL Item
Previous T2DM (6)
aoo
Item
Age of onset of diabetes
text
C0001779 (UMLS CUI [1,1])
C0574845 (UMLS CUI [1,2])
C0011849 (UMLS CUI [1,3])
glu_fast
Item
OGTT fasting plasma glucose
float
C0029161 (UMLS CUI [1,1])
C0583513 (UMLS CUI [1,2])
ins_fast
Item
OGTT fasting plasma insulin
float
C0029161 (UMLS CUI [1,1])
C0015663 (UMLS CUI [1,2])
C0857690 (UMLS CUI [1,3])
cpep_fast
Item
Serum C-peptide
float
C0006558 (UMLS CUI [1,1])
C0229671 (UMLS CUI [1,2])
glu_2h
Item
OGTT 120 min plasma glucose
float
C0202042 (UMLS CUI [1,1])
C0029161 (UMLS CUI [1,2])
C0429928 (UMLS CUI [1,3])
C1292425 (UMLS CUI [1,4])
ins_2h
Item
OGTT 120 min plasma insulin
float
C0029161 (UMLS CUI [1,1])
C0429928 (UMLS CUI [1,2])
C1292425 (UMLS CUI [1,3])
C0032105 (UMLS CUI [1,4])
C0021641 (UMLS CUI [1,5])
hba1c
Item
Blood GHbA1C
float
C0019018 (UMLS CUI [1,1])
p_adipon
Item
Plasma adiponectin
float
C0032105 (UMLS CUI [1,1])
C2700366 (UMLS CUI [1,2])
s_gadab
Item
Serum GAD antibodies
float
C0229671 (UMLS CUI [1,1])
C0443891 (UMLS CUI [1,2])
s_krea
Item
Creatinine
text
C0201976 (UMLS CUI [1,1])
chol
Item
Total cholesterol
float
C0543421 (UMLS CUI [1,1])
ldl
Item
LDL cholesterol
float
C0428474 (UMLS CUI [1,1])
hdl
Item
HDL cholesterol
float
C0428472 (UMLS CUI [1,1])
tg
Item
Total triglycerides
float
C0202236 (UMLS CUI [1,1])
height
Item
Height
float
C0005890 (UMLS CUI [1,1])
weight
Item
Weight
float
C0005910 (UMLS CUI [1,1])
bmi
Item
Body mass index
float
C1305855 (UMLS CUI [1,1])
hip
Item
Hip circumference
float
C0562350 (UMLS CUI [1,1])
waist
Item
Waist circumference
float
C0455829 (UMLS CUI [1,1])
sbp
Item
Systolic blood pressure
float
C0871470 (UMLS CUI [1,1])
dbp
Item
Diastolic blood pressure
float
C0428883 (UMLS CUI [1,1])
Item
Use of blood pressure medication
text
C0005823 (UMLS CUI [1,1])
C0013227 (UMLS CUI [1,2])
Code List
Use of blood pressure medication
CL Item
No use of blood pressure medication (0)
CL Item
Blood pressure medication used (1)
Item
Use of lipid medication
text
C0585943 (UMLS CUI [1,1])
Code List
Use of lipid medication
CL Item
No use of lipid medication (0)
CL Item
Lipid medication used (1)
Item
Use of diabetes medication
text
C0935929 (UMLS CUI [1,1])
Code List
Use of diabetes medication
CL Item
No use of diabetes medication (0)
CL Item
Diabetes medication used (1)
consortium
Item
Consortium name
string
C1880171 (UMLS CUI [1,1])
C0027365 (UMLS CUI [1,2])
cohort
Item
T2D-GENES cohort name
string
C0599755 (UMLS CUI [1,1])
C0027365 (UMLS CUI [1,2])

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