ID

45464

Descripción

Principal Investigator: Shaun Purcell, PhD, Broad Institute, Cambridge, MA, USA MeSH: Schizophrenia https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs000473 Current findings of the genetic risk of schizophrenia and bipolar disorder emerging from genome wide association studies (GWAS) support a highly polygenic model displaying the full spectrum of causal alleles that includes the extremes of rare, penetrant alleles as well as common alleles of small effect. Lower frequency polymorphism, rare variants and private mutations have eluded measurement by GWAS studies and thus association with disease. In order to create a comprehensive catalogue of low frequency or rare coding variation in individuals with psychiatric disease and to build a foundation for future genetic studies of schizophrenia and bipolar disorder, we have obtained whole exome DNA sequence from a population-based schizophrenia and bipolar disorder Swedish case-control cohort.

Link

dbGap study = phs000473

Palabras clave

  1. 20/10/22 20/10/22 - Simon Heim
  2. 13/12/22 13/12/22 - Kristina Keller
Titular de derechos de autor

Shaun Purcell, PhD, Broad Institute, Cambridge, MA, USA

Subido en

13 de diciembre de 2022

DOI

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Licencia

Creative Commons BY 4.0

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dbGaP phs000473 Sweden-Schizophrenia Population-Based Case-Control Exome Sequencing

Sample ID, body site where sample was obtained, analyte type, histological type of sample, and tumor status of sample obtained from participants with or without schizophrenia and involved in the "Sweden-Schizophrenia Population-Based Case-Control Exome Sequencing" project.

pht002601
Descripción

pht002601

Sample ID
Descripción

SAMPID

Tipo de datos

string

Alias
UMLS CUI [1,1]
C1299222
Body site where sample was collected - all are LCLs made from peripheral blood [LCL]
Descripción

BODY_SITE

Tipo de datos

string

Alias
UMLS CUI [1,1]
C0449705
UMLS CUI [1,2]
C0682526
UMLS CUI [1,3]
C0229664
Analyte type - all samples are RNA [RNA]
Descripción

ANALYTE_TYPE

Tipo de datos

string

Alias
UMLS CUI [1,1]
C4744818
UMLS CUI [1,2]
C0035668
Histological type
Descripción

HISTOLOGICAL_TYPE

Tipo de datos

text

Alias
UMLS CUI [1,1]
C0449574
Tumor status of samples
Descripción

IS_TUMOR

Tipo de datos

text

Alias
UMLS CUI [1,1]
C0475752

Similar models

Sample ID, body site where sample was obtained, analyte type, histological type of sample, and tumor status of sample obtained from participants with or without schizophrenia and involved in the "Sweden-Schizophrenia Population-Based Case-Control Exome Sequencing" project.

Name
Tipo
Description | Question | Decode (Coded Value)
Tipo de datos
Alias
Item Group
pht002601
SAMPID
Item
Sample ID
string
C1299222 (UMLS CUI [1,1])
BODY_SITE
Item
Body site where sample was collected - all are LCLs made from peripheral blood [LCL]
string
C0449705 (UMLS CUI [1,1])
C0682526 (UMLS CUI [1,2])
C0229664 (UMLS CUI [1,3])
ANALYTE_TYPE
Item
Analyte type - all samples are RNA [RNA]
string
C4744818 (UMLS CUI [1,1])
C0035668 (UMLS CUI [1,2])
HISTOLOGICAL_TYPE
Item
Histological type
text
C0449574 (UMLS CUI [1,1])
Item
Tumor status of samples
text
C0475752 (UMLS CUI [1,1])
Code List
Tumor status of samples
CL Item
Is not a tumor (N)
CL Item
Is tumor (Y)

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