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ID

45464

Beschrijving

Principal Investigator: Shaun Purcell, PhD, Broad Institute, Cambridge, MA, USA MeSH: Schizophrenia https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs000473 Current findings of the genetic risk of schizophrenia and bipolar disorder emerging from genome wide association studies (GWAS) support a highly polygenic model displaying the full spectrum of causal alleles that includes the extremes of rare, penetrant alleles as well as common alleles of small effect. Lower frequency polymorphism, rare variants and private mutations have eluded measurement by GWAS studies and thus association with disease. In order to create a comprehensive catalogue of low frequency or rare coding variation in individuals with psychiatric disease and to build a foundation for future genetic studies of schizophrenia and bipolar disorder, we have obtained whole exome DNA sequence from a population-based schizophrenia and bipolar disorder Swedish case-control cohort.

Link

dbGap study = phs000473

Trefwoorden

  1. 20-10-22 20-10-22 - Simon Heim
  2. 13-12-22 13-12-22 - Kristina Keller
Houder van rechten

Shaun Purcell, PhD, Broad Institute, Cambridge, MA, USA

Geüploaded op

13 december 2022

DOI

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Licentie

Creative Commons BY 4.0

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    dbGaP phs000473 Sweden-Schizophrenia Population-Based Case-Control Exome Sequencing

    Subject ID, sample ID, sample source, source sample ID, and sample use variable obtained from participants with or without schizophrenia and involved in the "Sweden-Schizophrenia Population-Based Case-Control Exome Sequencing" project.

    pht002599
    Beschrijving

    pht002599

    De-identified subject ID
    Beschrijving

    SUBJID

    Datatype

    text

    Alias
    UMLS CUI [1,1]
    C2348585
    Sample ID
    Beschrijving

    SAMPID

    Datatype

    string

    Alias
    UMLS CUI [1,1]
    C1299222
    Source repository where samples originate
    Beschrijving

    SAMP_SOURCE

    Datatype

    string

    Alias
    UMLS CUI [1,1]
    C0449416
    UMLS CUI [1,2]
    C3847505
    Sample ID used in the Source Repository
    Beschrijving

    SOURCE_SAMPID

    Datatype

    string

    Alias
    UMLS CUI [1,1]
    C1299222
    UMLS CUI [1,2]
    C0449416
    UMLS CUI [1,3]
    C3847505
    Sample use. Seq_DNA_SNP_CNV: SNP and CNV genotypes derived from sequence data; Seq_DNA_WholeExome: Whole exome sequencing
    Beschrijving

    SAMPLE_USE

    Datatype

    string

    Alias
    UMLS CUI [1,1]
    C1524063
    UMLS CUI [1,2]
    C0370003
    UMLS CUI [1,3]
    C0017431
    UMLS CUI [1,4]
    C3640077

    Similar models

    Subject ID, sample ID, sample source, source sample ID, and sample use variable obtained from participants with or without schizophrenia and involved in the "Sweden-Schizophrenia Population-Based Case-Control Exome Sequencing" project.

    Name
    Type
    Description | Question | Decode (Coded Value)
    Datatype
    Alias
    Item Group
    pht002599
    SUBJID
    Item
    De-identified subject ID
    text
    C2348585 (UMLS CUI [1,1])
    SAMPID
    Item
    Sample ID
    string
    C1299222 (UMLS CUI [1,1])
    SAMP_SOURCE
    Item
    Source repository where samples originate
    string
    C0449416 (UMLS CUI [1,1])
    C3847505 (UMLS CUI [1,2])
    SOURCE_SAMPID
    Item
    Sample ID used in the Source Repository
    string
    C1299222 (UMLS CUI [1,1])
    C0449416 (UMLS CUI [1,2])
    C3847505 (UMLS CUI [1,3])
    SAMPLE_USE
    Item
    Sample use. Seq_DNA_SNP_CNV: SNP and CNV genotypes derived from sequence data; Seq_DNA_WholeExome: Whole exome sequencing
    string
    C1524063 (UMLS CUI [1,1])
    C0370003 (UMLS CUI [1,2])
    C0017431 (UMLS CUI [1,3])
    C3640077 (UMLS CUI [1,4])

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