ID

45189

Description

Principal Investigator: Philip R. Taylor, National Cancer Institute, National Institutes of Health, Bethesda, MD, USA MeSH: Squamous Cell Carcinoma,Esophageal Cancer,Gastric Cancer https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs000361 This project aims to conduct genome-wide association studies (GWAS) in two anatomically different upper gastrointestinal (UGI) cancer sites in two populations with distinctly different disease rates and genetic profiles. One population has very high rates for both esophageal squamous cell carcinomas (ESCCs) and gastric cancers (GCs) and is comprised of Asians (*the "Asian UGI GWAS"*), while the other population has low rates of ESCC and GC and includes non-Asians from the Americas, Europe, and Australia (*the "Non-Asian UGI GWAS"*). Study participants for the Asian UGI GWAS reported here (Illumina 660W Quad chip) were drawn from 2 studies, the Shanxi Upper Gastrointestinal Cancer Genetics Project (Shanxi) and the Linxian Nutrition Intervention Trial (NIT), a prospective cohort, and included a total of 1898 ESCCs, 1625 GCs, and 2100 controls. For the 2nd phase (8 TaqMan SNPs), additional subjects from Shanxi and NIT as well as subjects from the Shanghai Men's Health Study (SMHS), the Shanghai Women's Health Study (SWHS), and the Singapore Chinese Health Study (SCHS) were also included (217 ESCCs, 615 GCs, 1202 controls). Altogether 2115 ESCCs, 2240 GCs, and 3302 controls were genotyped in this study.

Lien

dbGaP study = phs000361

Mots-clés

  1. 19/08/2022 19/08/2022 - Simon Heim
  2. 12/10/2022 12/10/2022 - Adrian Schulz
Détendeur de droits

Philip R. Taylor, National Cancer Institute, National Institutes of Health, Bethesda, MD, USA

Téléchargé le

12 octobre 2022

DOI

Pour une demande vous connecter.

Licence

Creative Commons BY 4.0

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dbGaP phs000361 Genome-Wide Association Studies in Upper Gastrointestinal Cancers (Asian)

Eligibility Criteria

  1. StudyEvent: SEV1
    1. Eligibility Criteria
    2. Subject ID, consent group, and affection status of participants involved in genome-wide association studies in two anatomically different upper gastrointestinal cancer sites in two populations with distinctly different disease rates and genetic profiles. One population has very high rates for both esophageal squamous cell carcinomas (ESCC) and gastric cancers (GC) and is comprised of Asians, while the other population has low rates of ESCC and GC and includes non-Asians from the Americas, Europe, and Australia.
    3. Sample ID and subject ID of participants involved in genome-wide association studies in two anatomically different upper gastrointestinal cancer sites in two populations with distinctly different disease rates and genetic profiles. One population has very high rates for both esophageal squamous cell carcinomas (ESCC) and gastric cancers (GC) and is comprised of Asians, while the other population has low rates of ESCC and GC and includes non-Asians from the Americas, Europe, and Australia.
    4. Subject ID, study design (cohort, case or control), affection status, gender, and age of participants involved in genome-wide association studies in two anatomically different upper gastrointestinal cancer sites in two populations with distinctly different disease rates and genetic profiles. One population has very high rates for both esophageal squamous cell carcinomas (ESCC) and gastric cancers (GC) and is comprised of Asians, while the other population has low rates of ESCC and GC and includes non-Asians from the Americas, Europe, and Australia.
Inclusion and exclusion criteria
Description

Inclusion and exclusion criteria

Esophageal squamous cell carcinomas (ESCCs) include incident, primary esophageal cancers with squamous histology.
Description

Esophageal squamous cell carcinomas (ESCCs) include incident, primary esophageal cancers with squamous histology.

Type de données

boolean

Alias
UMLS CUI [1,1]
C0279626
Gastric cancers (GCs) include incident, primary gastric adenocarcinomas.
Description

Gastric cancers (GCs) include incident, primary gastric adenocarcinomas.

Type de données

boolean

Alias
UMLS CUI [1,1]
C0024623
Controls were all cancer-free at the time of enrollment (and blood draw).
Description

Controls were all cancer-free at the time of enrollment (and blood draw).

Type de données

boolean

Alias
UMLS CUI [1,1]
C0009932
UMLS CUI [1,2]
C1516879
UMLS CUI [1,3]
C1298908
UMLS CUI [1,4]
C0006826

Similar models

Eligibility Criteria

  1. StudyEvent: SEV1
    1. Eligibility Criteria
    2. Subject ID, consent group, and affection status of participants involved in genome-wide association studies in two anatomically different upper gastrointestinal cancer sites in two populations with distinctly different disease rates and genetic profiles. One population has very high rates for both esophageal squamous cell carcinomas (ESCC) and gastric cancers (GC) and is comprised of Asians, while the other population has low rates of ESCC and GC and includes non-Asians from the Americas, Europe, and Australia.
    3. Sample ID and subject ID of participants involved in genome-wide association studies in two anatomically different upper gastrointestinal cancer sites in two populations with distinctly different disease rates and genetic profiles. One population has very high rates for both esophageal squamous cell carcinomas (ESCC) and gastric cancers (GC) and is comprised of Asians, while the other population has low rates of ESCC and GC and includes non-Asians from the Americas, Europe, and Australia.
    4. Subject ID, study design (cohort, case or control), affection status, gender, and age of participants involved in genome-wide association studies in two anatomically different upper gastrointestinal cancer sites in two populations with distinctly different disease rates and genetic profiles. One population has very high rates for both esophageal squamous cell carcinomas (ESCC) and gastric cancers (GC) and is comprised of Asians, while the other population has low rates of ESCC and GC and includes non-Asians from the Americas, Europe, and Australia.
Name
Type
Description | Question | Decode (Coded Value)
Type de données
Alias
Item Group
Inclusion and exclusion criteria
Esophageal squamous cell carcinomas (ESCCs) include incident, primary esophageal cancers with squamous histology.
Item
Esophageal squamous cell carcinomas (ESCCs) include incident, primary esophageal cancers with squamous histology.
boolean
C0279626 (UMLS CUI [1,1])
Gastric cancers (GCs) include incident, primary gastric adenocarcinomas.
Item
Gastric cancers (GCs) include incident, primary gastric adenocarcinomas.
boolean
C0024623 (UMLS CUI [1,1])
Controls were all cancer-free at the time of enrollment (and blood draw).
Item
Controls were all cancer-free at the time of enrollment (and blood draw).
boolean
C0009932 (UMLS CUI [1,1])
C1516879 (UMLS CUI [1,2])
C1298908 (UMLS CUI [1,3])
C0006826 (UMLS CUI [1,4])

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