ID

45160

Beskrivning

Principal Investigator: Mark A. Rubin, MD, Weill Cornell Medical College, New York, NY, USA MeSH: Prostatic Neoplasms https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs000311 We have developed FusionSeq to identify fusion transcripts from paired-end RNA-sequencing. FusionSeq includes filters to remove spurious candidate fusions with artifacts such as misalignments or random pairing of transcript fragments and it ranks candidates according to several statistics. It also has a module to identify exact sequences at breakpoint junctions. FusionSeq detected known and novel fusions in a specially sequenced calibration data set, including 8 cancers with and without known rearrangements.

Länk

dbGaP study = phs000311

Nyckelord

Versioner (2)
  1. 2022-08-28 2022-08-28 - Simon Heim
  2. 2022-10-12 2022-10-12 - Adrian Schulz
Rättsinnehavare

Mark A. Rubin, MD, Weill Cornell Medical College, New York, NY, USA

Uppladdad den

12 oktober 2022

DOI

För en begäran logga in.

Licens

Creative Commons BY 4.0
Modellkommentarer :

Här kan du kommentera modellen. Med hjälp av pratbubblor i Item-grupperna och Item kan du lägga in specifika kommentarer.

Tillbaka till modellkommentarer
Itemgroup-kommentar för :

Item-kommentar för :

  • Senaste
  • Äldsta
  • Önskad
  • Senaste
    • Senaste
    • Äldsta
    • Önskad

Inga kommentarer

Du måste vara inloggad för att kunna ladda ner formulär. Var vänlig logga in eller registrera dig utan kostnad.

dbGaP phs000311 FusionSeq: Finding Fusions with Paired-End RNA-Seq

Engelsk

Eligibility Criteria

5 Formulär  
Inclusion and exclusion criteria
Beskrivning

Inclusion and exclusion criteria

Prostate tissues collected post-robotic prostatectomy surgery and containing high-density tumor areas were used for this study. DNA samples in the study were extracted from tissue and blood, which were collected prior to the prostatectomy surgery.
Beskrivning

Prostate tissues collected post-robotic prostatectomy surgery and containing high-density tumor areas were used for this study. DNA samples in the study were extracted from tissue and blood, which were collected prior to the prostatectomy surgery.

Datatyp

boolean

Alias
UMLS CUI [1,1]
C1512693
UMLS CUI [1,2]
C0586597
UMLS CUI [1,3]
C2922133
UMLS CUI [1,4]
C0027651
UMLS CUI [1,5]
C1268672
UMLS CUI [2,1]
C1512693
UMLS CUI [2,2]
C0012854
UMLS CUI [2,3]
C0370003
UMLS CUI [2,4]
C0586597
UMLS CUI [2,5]
C0178913
UMLS CUI [2,6]
C0332152
UMLS CUI [2,7]
C0033573
Tillbaka till toppen

Similar models

Eligibility Criteria

5 Formulär
Name
Typ
Description | Question | Decode (Coded Value)
Datatyp
Alias
Item Group
Inclusion and exclusion criteria
Prostate tissues collected post-robotic prostatectomy surgery and containing high-density tumor areas were used for this study. DNA samples in the study were extracted from tissue and blood, which were collected prior to the prostatectomy surgery.
Item
Prostate tissues collected post-robotic prostatectomy surgery and containing high-density tumor areas were used for this study. DNA samples in the study were extracted from tissue and blood, which were collected prior to the prostatectomy surgery.
boolean
C1512693 (UMLS CUI [1,1])
C0586597 (UMLS CUI [1,2])
C2922133 (UMLS CUI [1,3])
C0027651 (UMLS CUI [1,4])
C1268672 (UMLS CUI [1,5])
C1512693 (UMLS CUI [2,1])
C0012854 (UMLS CUI [2,2])
C0370003 (UMLS CUI [2,3])
C0586597 (UMLS CUI [2,4])
C0178913 (UMLS CUI [2,5])
C0332152 (UMLS CUI [2,6])
C0033573 (UMLS CUI [2,7])
Tillbaka till toppen 

Hjälp

Do you need help on how to use the search function? Please watch the corresponding tutorial video for more details and learn how to use the search function most efficiently.

Watch Tutorial