ID

45111

Descrizione

Principal Investigator: Mark A. Rubin, MD, Weill Cornell Medical College, New York, NY, USA MeSH: Prostatic Neoplasms https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs000311 We have developed FusionSeq to identify fusion transcripts from paired-end RNA-sequencing. FusionSeq includes filters to remove spurious candidate fusions with artifacts such as misalignments or random pairing of transcript fragments and it ranks candidates according to several statistics. It also has a module to identify exact sequences at breakpoint junctions. FusionSeq detected known and novel fusions in a specially sequenced calibration data set, including 8 cancers with and without known rearrangements.

collegamento

https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs000311

Keywords

versioni (2)
  1. 28/08/22 28/08/22 - Simon Heim
  2. 12/10/22 12/10/22 - Adrian Schulz
Titolare del copyright

Mark A. Rubin, MD, Weill Cornell Medical College, New York, NY, USA

Caricato su

28 agosto 2022

DOI

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Licenza

Creative Commons BY 4.0
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dbGaP phs000311 FusionSeq: Finding Fusions with Paired-End RNA-Seq

Inglese

Eligibility Criteria

5 moduli  
Inclusion and exclusion criteria
Descrizione

Inclusion and exclusion criteria

Prostate tissues collected post-robotic prostatectomy surgery and containing high-density tumor areas were used for this study. DNA samples in the study were extracted from tissue and blood, which were collected prior to the prostatectomy surgery.
Descrizione

Prostate tissues collected post-robotic prostatectomy surgery and containing high-density tumor areas were used for this study. DNA samples in the study were extracted from tissue and blood, which were collected prior to the prostatectomy surgery.

Tipo di dati

boolean

Alias
UMLS CUI [1,1]
C1512693
UMLS CUI [1,2]
C0586597
UMLS CUI [1,3]
C2922133
UMLS CUI [1,4]
C0027651
UMLS CUI [1,5]
C1268672
UMLS CUI [2,1]
C1512693
UMLS CUI [2,2]
C0012854
UMLS CUI [2,3]
C0370003
UMLS CUI [2,4]
C0586597
UMLS CUI [2,5]
C0178913
UMLS CUI [2,6]
C0332152
UMLS CUI [2,7]
C0033573
Ritorna all'inizio della pagina

Similar models

Eligibility Criteria

5 moduli
Name
genere
Description | Question | Decode (Coded Value)
Tipo di dati
Alias
Item Group
Inclusion and exclusion criteria
Prostate tissues collected post-robotic prostatectomy surgery and containing high-density tumor areas were used for this study. DNA samples in the study were extracted from tissue and blood, which were collected prior to the prostatectomy surgery.
Item
Prostate tissues collected post-robotic prostatectomy surgery and containing high-density tumor areas were used for this study. DNA samples in the study were extracted from tissue and blood, which were collected prior to the prostatectomy surgery.
boolean
C1512693 (UMLS CUI [1,1])
C0586597 (UMLS CUI [1,2])
C2922133 (UMLS CUI [1,3])
C0027651 (UMLS CUI [1,4])
C1268672 (UMLS CUI [1,5])
C1512693 (UMLS CUI [2,1])
C0012854 (UMLS CUI [2,2])
C0370003 (UMLS CUI [2,3])
C0586597 (UMLS CUI [2,4])
C0178913 (UMLS CUI [2,5])
C0332152 (UMLS CUI [2,6])
C0033573 (UMLS CUI [2,7])
Ritorna all'inizio della pagina 

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