ID

40240

Description

The ISBER Biospecimen Science Working Group has developed a SPREC that identifies and records the main pre-analytical factors that may have impact on the integrity of sampled clinical fluids and solid biospecimens and their simple derivatives during collection, processing and storage. SPREC comprises seven elements for both fluid and solid samples, defining the sample and primary container type, periods of cold and warm ischemia, and subsequent handling steps including speed and temperature of centrifugation and final storage temperature. This form contains information about solid samples. More detailed information can be found at https://www.isber.org/page/SPREC

Lien

https://www.isber.org/page/SPREC

Mots-clés

Versions (3)
  1. 08/10/2019 08/10/2019 -
  2. 24/03/2020 24/03/2020 -
  3. 24/03/2020 24/03/2020 -
Détendeur de droits

ISBER

Téléchargé le

24 mars 2020

DOI

Pour une demande vous connecter.

Licence

Creative Commons BY-NC 4.0
Modèle Commentaires :

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SPREC V3.0

Anglais

Solid samples

1 Formulaires  
  1. StudyEvent: ODM
    1. Solid samples
Solid samples
Description

Solid samples

Alias
UMLS CUI-1
C2347029
UMLS CUI-2
C0205208
Type of sample
Description

Type of sample

Type de données

text

Alias
UMLS CUI [1]
C2347029
Type of collection
Description

Type of collection

Type de données

text

Alias
UMLS CUI [1,1]
C2347026
UMLS CUI [1,2]
C0445613
Warm ischemia time
Description

Warm ischemia time

Type de données

text

Alias
UMLS CUI [1,1]
C0040223
UMLS CUI [1,2]
C1567664
Cold ischemia time
Description

Cold ischemia time

Type de données

text

Alias
UMLS CUI [1]
C1563922
Fixation / stabilization type
Description

Fixation / stabilization type

Type de données

text

Alias
UMLS CUI [1]
C1293130
UMLS CUI [2]
C0185023
Fixation time
Description

Fixation time

Type de données

text

Alias
UMLS CUI [1,1]
C0185023
UMLS CUI [1,2]
C0040223
Long-term storage
Description

**PP, polypropylene ***Liquid nitrogen refers to either vapor or liquid phase (this information being documented in the biobank’s SOPs)

Type de données

text

Alias
UMLS CUI [1,1]
C1698986
UMLS CUI [1,2]
C0443252
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Similar models

Solid samples

1 Formulaires
  1. StudyEvent: ODM
    1. Solid samples
Name
Type
Description | Question | Decode (Coded Value)
Type de données
Alias
Item Group
Solid samples
C2347029 (UMLS CUI-1)
C0205208 (UMLS CUI-2)
Item
Type of sample
text
C2347029 (UMLS CUI [1])
Type of sample
Code List
Type of sample
CL Item
Fresh cells from non blood specimen type (e.g. biopsy)  (CEN)
Code comes from the Laboratory Data Management System (LDMS) (Comment:en)
CL Item
Cells from non blood specimen type (e.g. dissociated tissue), viable  (CLN)
Code comes from the Laboratory Data Management System (LDMS) (Comment:en)
CL Item
Cells from fine needle aspirate  (FNA)
(Comment:en)
CL Item
Hair  (HAR)
(Comment:en)
CL Item
Cells from laser capture microdissected tissue  (LCM)
(Comment:en)
CL Item
Cells from non blood specimen type (e.g. dissociated tissue), non viable  (PEN)
Code comes from the Laboratory Data Management System (LDMS) (Comment:en)
CL Item
Placenta  (PLC)
Code comes from the Laboratory Data Management System (LDMS) (Comment:en)
CL Item
Solid tissue  (TIS)
Code comes from the Laboratory Data Management System (LDMS) (Comment:en)
CL Item
Disrupted tissue, non-viable  (TCM)
(Comment:en)
CL Item
Bone (BON)
CL Item
Nails (NAL)
CL Item
Teeth  (TTH)
CL Item
Other (ZZZ)
Item
Type of collection
text
C2347026 (UMLS CUI [1,1])
C0445613 (UMLS CUI [1,2])
Type of sample
Code List
Type of collection
CL Item
Fine needle aspirate  (FNA)
(Comment:en)
CL Item
Autopsy < 6 h post-mortem  (A06)
CL Item
Autopsy 6-12 h post-mortem  (A12)
CL Item
Autopsy 12-24 h post-mortem  (A24)
CL Item
Autopsy 24-48 h post-mortem  (A48)
CL Item
Autopsy 48-72 h post-mortem  (A72)
CL Item
Biopsy in culture media  (BCM)
CL Item
Biopsy  (BPS)
CL Item
Biopsy in normal saline or phosphate buffered saline  (BSL)
CL Item
Biopsy in tissue low temperature transport media  (BTM)
CL Item
Punction  (PUN)
(Comment:en)
CL Item
Surgical excision in culture media  (SCM)
(Comment:en)
CL Item
Surgical excision  (SRG)
(Comment:en)
CL Item
Surgical excision in normal saline or phosphate buffered saline  (SSL)
(Comment:en)
CL Item
Surgical excision in tissue low temperature transport media  (STM)
(Comment:en)
CL Item
Surgical excision in vacuum container  (VAC)
(Comment:en)
CL Item
Swab  (SWB)
Code comes from the Laboratory Data Management System (LDMS) (Comment:en)
CL Item
Other  (ZZZ)
(Comment:en)
Item
Warm ischemia time
text
C0040223 (UMLS CUI [1,1])
C1567664 (UMLS CUI [1,2])
Type of sample
Code List
Warm ischemia time
CL Item
< 2 min  (A)
CL Item
2 to 10 min  (B)
CL Item
10 to 20 min  (C)
CL Item
20 to 30 min  (D)
CL Item
30 to 60 min  (E)
CL Item
>60 min  (F)
CL Item
Unknown  (X)
CL Item
Not applicable (e.g. biopsy)  (N)
CL Item
Other  (Z)
Item
Cold ischemia time
text
C1563922 (UMLS CUI [1])
Type of sample
Code List
Cold ischemia time
CL Item
RT < 2 min  (A)
CL Item
RT 2 to 10 min  (B)
CL Item
RT 10 to 20 min  (C)
CL Item
RT 20 to 30 min  (D)
CL Item
RT 30 to 60 min  (E)
CL Item
RT 60 min to 3h (F)
CL Item
Unknown  (X)
CL Item
Not applicable (e.g. autopsy)  (N)
CL Item
Other  (Z)
CL Item
RT 3h-6h (G)
CL Item
RT 6h-12h (H)
CL Item
RT >12h  (I)
CL Item
2°C–10°C <60 min (E4)
CL Item
2°C–10°C 60 min–3 h (F4)
CL Item
2°C–10°C 3–6 h (G4)
CL Item
2°C–10°C 6–12 h (H4)
CL Item
2°C–10°C >12 h  (I4)
Item
Fixation / stabilization type
text
C1293130 (UMLS CUI [1])
C0185023 (UMLS CUI [2])
Type of sample
Code List
Fixation / stabilization type
CL Item
Non-aldehyde with acetic acid  (ACA)
(Comment:en)
CL Item
Aldehyde-based  (ALD)
(Comment:en)
CL Item
Allprotect ® tissue reagent  (ALL)
(Comment:en)
CL Item
Alcohol-based  (ETH)
(Comment:en)
CL Item
Non-buffered formalin  (FOR)
(Comment:en)
CL Item
Heat stabilization  (HST)
(Comment:en)
CL Item
Snap freezing  (SNP)
Code comes from the Laboratory Data Management System (LDMS) (Comment:en)
CL Item
Non-aldehyde based without acetic acid  (NAA)
(Comment:en)
CL Item
Neutral buffered formalin  (NBF)
(Comment:en)
CL Item
Optimum cutting temperature medium  (OCT)
(Comment:en)
CL Item
PAXgene® tissue  (PXT)
(Comment:en)
CL Item
RNA Later® (RNL)
Code comes from the Laboratory Data Management System (LDMS) (Comment:en)
CL Item
Unknown  (XXX)
(Comment:en)
CL Item
Other  (ZZZ)
(Comment:en)
CL Item
Vacuum technology stabilization  (VAC)
Item
Fixation time
text
C0185023 (UMLS CUI [1,1])
C0040223 (UMLS CUI [1,2])
Type of sample
Code List
Fixation time
CL Item
<15 min  (A)
CL Item
15 min to 1 h  (B)
CL Item
1 to 4 h  (C)
CL Item
4 to 8 h  (D)
CL Item
8 to 24 h  (E)
CL Item
24 to 48 h  (F)
CL Item
48 to 72 h (G)
CL Item
Not applicable  (N)
CL Item
Unknown  (X)
CL Item
Other  (Z)
CL Item
>72h  (H)
Item
Long-term storage
text
C1698986 (UMLS CUI [1,1])
C0443252 (UMLS CUI [1,2])
Type of sample
Code List
Long-term storage
CL Item
PP tube 0.5- to 2-mL** (-85) to (-60) °C  (A)
CL Item
PP tube 0.5- to 2-mL (-35) to (-18) °C  (B)
CL Item
Cryotube 1- to 2-mL Liquid nitrogen***  (C)
CL Item
Cryotube 1- to 2-mL (-85) to (-60) °C  (D)
CL Item
Cryotube 1- to 2-mL Programmable freezing to <-135 °C  (E)
CL Item
Plastic cryostraw Liquid nitrogen  (F)
CL Item
Straw (-85) to (-60) °C  (G)
CL Item
Cryotube 1- to 2-mL LN*** after temporary (-85) to (-60) °C  (N)
CL Item
Unknown  (X)
CL Item
Other  (Z)
CL Item
PP tube 0.5- to 2-mL <-135 ° C  (V)
CL Item
Straw (-35) to (-18) °C  (H)
CL Item
Straw Programmable freezing to <-135 °C  (I)
CL Item
PP tube ≥ 5 mL (-85) to (-60) °C  (J)
CL Item
PP tube ≥ 5 mL (-35) to (-18) °C  (K)
CL Item
Microplate (-85) to (-60) °C  (L)
CL Item
Microplate (-35) to (-18) °C  (M)
CL Item
Straw LN*** after temporary (-85) to (-60) °C  (O)
CL Item
Paraffin block RT or 2 to 10°C  (P)
CL Item
Bag LN***  (Q)
CL Item
Dry technology medium RT  (R)
CL Item
PP tube 40 to 500L (-85) to (-60) °C  (S)
CL Item
PP tube 40 to 500L (-35) to (-18) °C  (T)
CL Item
PP tube 40- to 500-L <-135 ° C  (W)
CL Item
Original primary container (-35)-(-18) °C or (-85)-(-60) °C  (Y)
CL Item
Paraffin block (-35) to (-18)°C (U)
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