ID

40187

Beskrivning

https://www.hl7.org/fhir/resourcelist.html (accessed at 14.02.2020) This form contains an incomplete implementation of the FHIR Resource Substance Nucleic Acid (0). After preliminary review, it contains the data elements that request clinical information.

Länk

https://www.hl7.org/fhir/resourcelist.html

Nyckelord

Versioner (3)
  1. 2020-02-24 2020-02-24 -
  2. 2020-03-05 2020-03-05 -
  3. 2020-03-18 2020-03-18 -
Rättsinnehavare

HL7 FHIR

Uppladdad den

18 mars 2020

DOI

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Licens

Creative Commons BY-NC 4.0
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FHIR v4.0.1

Engelsk

Resource Substance Nucleic Acid (0)

1 Formulär  
SubstanceNucleicAcid (0)
Beskrivning

SubstanceNucleicAcid (0)

Alias
UMLS CUI-1
C0439861
UMLS CUI-2
C0028606
SubstanceNucleicAcid.sequenceType
Beskrivning

SubstanceNucleicAcid.sequenceType

Datatyp

text

Alias
UMLS CUI [1,1]
C0028606
UMLS CUI [1,2]
C1519249
UMLS CUI [1,3]
C0332307
UMLS CUI [2,1]
C0004793
UMLS CUI [2,2]
C0332307
SubstanceNucleicAcid.numberOfSubunits
Beskrivning

SubstanceNucleicAcid.numberOfSubunits

Datatyp

integer

Alias
UMLS CUI [1,1]
C0028606
UMLS CUI [1,2]
C1711351
UMLS CUI [1,3]
C0449788
SubstanceNucleicAcid.areaOfHybridisation
Beskrivning

The area of hybridisation shall be described if applicable for double stranded RNA or DNA. The number associated with the subunit followed by the number associated to the residue shall be specified in increasing order. The underscore “” shall be used as separator as follows: “Subunitnumber Residue”.

Datatyp

text

Alias
UMLS CUI [1,1]
C0028602
UMLS CUI [1,2]
C0205146
SubstanceNucleicAcid.oligoNucleotideType
Beskrivning

SubstanceNucleicAcid.oligoNucleotideType

Datatyp

text

Alias
UMLS CUI [1,1]
C0028606
UMLS CUI [1,2]
C0028953
UMLS CUI [1,3]
C0332307
SubstanceNucleicAcid.subunit.subunit
Beskrivning

Index of linear sequences of nucleic acids in order of decreasing length. Sequences of the same length will be ordered by molecular weight. Subunits that have identical sequences will be repeated and have sequential subscripts.

Datatyp

integer

Alias
UMLS CUI [1,1]
C0918012
UMLS CUI [1,2]
C1519249
UMLS CUI [1,3]
C0205132
UMLS CUI [1,4]
C0028606
UMLS CUI [1,5]
C1711351
UMLS CUI [1,6]
C0442797
UMLS CUI [1,7]
C1444754
SubstanceNucleicAcid.subunit.sequence
Beskrivning

Actual nucleotide sequence notation from 5' to 3' end using standard single letter codes. In addition to the base sequence, sugar and type of phosphate or non-phosphate linkage should also be captured.

Datatyp

text

Alias
UMLS CUI [1,1]
C0028606
UMLS CUI [1,2]
C1711351
UMLS CUI [1,3]
C0004793
SubstanceNucleicAcid.subunit.length
Beskrivning

SubstanceNucleicAcid.subunit.length

Datatyp

integer

Alias
UMLS CUI [1,1]
C0028606
UMLS CUI [1,2]
C1711351
UMLS CUI [1,3]
C1444754
SubstanceNucleicAcid.subunit.sequenceAttachment
Beskrivning

SubstanceNucleicAcid.subunit.sequenceAttachment

Datatyp

text

Alias
UMLS CUI [1,1]
C0028606
UMLS CUI [1,2]
C1711351
UMLS CUI [1,3]
C0004793
UMLS CUI [1,4]
C1999228
SubstanceNucleicAcid.subunit.fivePrime
Beskrivning

The nucleotide present at the 5’ terminal shall be specified based on a controlled vocabulary. Since the sequence is represented from the 5' to the 3' end, the 5’ prime nucleotide is the letter at the first position in the sequence. A separate representation would be redundant.

Datatyp

text

Alias
UMLS CUI [1,1]
C0028606
UMLS CUI [1,2]
C1711351
UMLS CUI [1,3]
C0028630
UMLS CUI [1,4]
C1883644
SubstanceNucleicAcid.subunit.linkage.connectivity
Beskrivning

The entity that links the sugar residues together should also be captured for nearly all naturally occurring nucleic acid the linkage is a phosphate group. For many synthetic oligonucleotides phosphorothioate linkages are often seen. Linkage connectivity is assumed to be 3’-5’. If the linkage is either 3’-3’ or 5’-5’ this should be specified.

Datatyp

text

Alias
UMLS CUI [1,1]
C0028606
UMLS CUI [1,2]
C1711351
UMLS CUI [1,3]
C0006999
UMLS CUI [1,4]
C1551338
SubstanceNucleicAcid.subunit.linkage.residueSite
Beskrivning

SubstanceNucleicAcid.subunit.linkage.residueSite

Datatyp

text

Alias
UMLS CUI [1,1]
C0028606
UMLS CUI [1,2]
C1711351
UMLS CUI [1,3]
C0006999
UMLS CUI [1,4]
C1709915
UMLS CUI [1,5]
C0205145
SubstanceNucleicAcid.subunit.sugar.residueSite
Beskrivning

The residues that contain a given sugar will be captured. The order of given residues will be captured in the 5‘-3‘direction consistent with the base sequences listed above.

Datatyp

text

Alias
UMLS CUI [1,1]
C0028606
UMLS CUI [1,2]
C1711351
UMLS CUI [1,3]
C0242209
UMLS CUI [1,4]
C1709915
UMLS CUI [1,5]
C0205145
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Similar models

Resource Substance Nucleic Acid (0)

1 Formulär
Name
Typ
Description | Question | Decode (Coded Value)
Datatyp
Alias
Item Group
SubstanceNucleicAcid (0)
C0439861 (UMLS CUI-1)
C0028606 (UMLS CUI-2)
SubstanceNucleicAcid.sequenceType
Item
SubstanceNucleicAcid.sequenceType
text
C0028606 (UMLS CUI [1,1])
C1519249 (UMLS CUI [1,2])
C0332307 (UMLS CUI [1,3])
C0004793 (UMLS CUI [2,1])
C0332307 (UMLS CUI [2,2])
SubstanceNucleicAcid.numberOfSubunits
Item
SubstanceNucleicAcid.numberOfSubunits
integer
C0028606 (UMLS CUI [1,1])
C1711351 (UMLS CUI [1,2])
C0449788 (UMLS CUI [1,3])
SubstanceNucleicAcid.areaOfHybridisation
Item
SubstanceNucleicAcid.areaOfHybridisation
text
C0028602 (UMLS CUI [1,1])
C0205146 (UMLS CUI [1,2])
SubstanceNucleicAcid.oligoNucleotideType
Item
SubstanceNucleicAcid.oligoNucleotideType
text
C0028606 (UMLS CUI [1,1])
C0028953 (UMLS CUI [1,2])
C0332307 (UMLS CUI [1,3])
SubstanceNucleicAcid.subunit.subunit
Item
SubstanceNucleicAcid.subunit.subunit
integer
C0918012 (UMLS CUI [1,1])
C1519249 (UMLS CUI [1,2])
C0205132 (UMLS CUI [1,3])
C0028606 (UMLS CUI [1,4])
C1711351 (UMLS CUI [1,5])
C0442797 (UMLS CUI [1,6])
C1444754 (UMLS CUI [1,7])
SubstanceNucleicAcid.subunit.sequence
Item
SubstanceNucleicAcid.subunit.sequence
text
C0028606 (UMLS CUI [1,1])
C1711351 (UMLS CUI [1,2])
C0004793 (UMLS CUI [1,3])
SubstanceNucleicAcid.subunit.length
Item
SubstanceNucleicAcid.subunit.length
integer
C0028606 (UMLS CUI [1,1])
C1711351 (UMLS CUI [1,2])
C1444754 (UMLS CUI [1,3])
SubstanceNucleicAcid.subunit.sequenceAttachment
Item
SubstanceNucleicAcid.subunit.sequenceAttachment
text
C0028606 (UMLS CUI [1,1])
C1711351 (UMLS CUI [1,2])
C0004793 (UMLS CUI [1,3])
C1999228 (UMLS CUI [1,4])
SubstanceNucleicAcid.subunit.fivePrime
Item
SubstanceNucleicAcid.subunit.fivePrime
text
C0028606 (UMLS CUI [1,1])
C1711351 (UMLS CUI [1,2])
C0028630 (UMLS CUI [1,3])
C1883644 (UMLS CUI [1,4])
SubstanceNucleicAcid.subunit.linkage.connectivity
Item
SubstanceNucleicAcid.subunit.linkage.connectivity
text
C0028606 (UMLS CUI [1,1])
C1711351 (UMLS CUI [1,2])
C0006999 (UMLS CUI [1,3])
C1551338 (UMLS CUI [1,4])
SubstanceNucleicAcid.subunit.linkage.residueSite
Item
SubstanceNucleicAcid.subunit.linkage.residueSite
text
C0028606 (UMLS CUI [1,1])
C1711351 (UMLS CUI [1,2])
C0006999 (UMLS CUI [1,3])
C1709915 (UMLS CUI [1,4])
C0205145 (UMLS CUI [1,5])
SubstanceNucleicAcid.subunit.sugar.residueSite
Item
SubstanceNucleicAcid.subunit.sugar.residueSite
text
C0028606 (UMLS CUI [1,1])
C1711351 (UMLS CUI [1,2])
C0242209 (UMLS CUI [1,3])
C1709915 (UMLS CUI [1,4])
C0205145 (UMLS CUI [1,5])
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