ID

40187

Beschrijving

https://www.hl7.org/fhir/resourcelist.html (accessed at 14.02.2020) This form contains an incomplete implementation of the FHIR Resource Substance Nucleic Acid (0). After preliminary review, it contains the data elements that request clinical information.

Link

https://www.hl7.org/fhir/resourcelist.html

Trefwoorden

Versies (3)
  1. 24-02-20 24-02-20 -
  2. 05-03-20 05-03-20 -
  3. 18-03-20 18-03-20 -
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HL7 FHIR

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18 maart 2020

DOI

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Licentie

Creative Commons BY-NC 4.0
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FHIR v4.0.1

Engels

Resource Substance Nucleic Acid (0)

1 Formulieren  
SubstanceNucleicAcid (0)
Beschrijving

SubstanceNucleicAcid (0)

Alias
UMLS CUI-1
C0439861
UMLS CUI-2
C0028606
SubstanceNucleicAcid.sequenceType
Beschrijving

SubstanceNucleicAcid.sequenceType

Datatype

text

Alias
UMLS CUI [1,1]
C0028606
UMLS CUI [1,2]
C1519249
UMLS CUI [1,3]
C0332307
UMLS CUI [2,1]
C0004793
UMLS CUI [2,2]
C0332307
SubstanceNucleicAcid.numberOfSubunits
Beschrijving

SubstanceNucleicAcid.numberOfSubunits

Datatype

integer

Alias
UMLS CUI [1,1]
C0028606
UMLS CUI [1,2]
C1711351
UMLS CUI [1,3]
C0449788
SubstanceNucleicAcid.areaOfHybridisation
Beschrijving

The area of hybridisation shall be described if applicable for double stranded RNA or DNA. The number associated with the subunit followed by the number associated to the residue shall be specified in increasing order. The underscore “” shall be used as separator as follows: “Subunitnumber Residue”.

Datatype

text

Alias
UMLS CUI [1,1]
C0028602
UMLS CUI [1,2]
C0205146
SubstanceNucleicAcid.oligoNucleotideType
Beschrijving

SubstanceNucleicAcid.oligoNucleotideType

Datatype

text

Alias
UMLS CUI [1,1]
C0028606
UMLS CUI [1,2]
C0028953
UMLS CUI [1,3]
C0332307
SubstanceNucleicAcid.subunit.subunit
Beschrijving

Index of linear sequences of nucleic acids in order of decreasing length. Sequences of the same length will be ordered by molecular weight. Subunits that have identical sequences will be repeated and have sequential subscripts.

Datatype

integer

Alias
UMLS CUI [1,1]
C0918012
UMLS CUI [1,2]
C1519249
UMLS CUI [1,3]
C0205132
UMLS CUI [1,4]
C0028606
UMLS CUI [1,5]
C1711351
UMLS CUI [1,6]
C0442797
UMLS CUI [1,7]
C1444754
SubstanceNucleicAcid.subunit.sequence
Beschrijving

Actual nucleotide sequence notation from 5' to 3' end using standard single letter codes. In addition to the base sequence, sugar and type of phosphate or non-phosphate linkage should also be captured.

Datatype

text

Alias
UMLS CUI [1,1]
C0028606
UMLS CUI [1,2]
C1711351
UMLS CUI [1,3]
C0004793
SubstanceNucleicAcid.subunit.length
Beschrijving

SubstanceNucleicAcid.subunit.length

Datatype

integer

Alias
UMLS CUI [1,1]
C0028606
UMLS CUI [1,2]
C1711351
UMLS CUI [1,3]
C1444754
SubstanceNucleicAcid.subunit.sequenceAttachment
Beschrijving

SubstanceNucleicAcid.subunit.sequenceAttachment

Datatype

text

Alias
UMLS CUI [1,1]
C0028606
UMLS CUI [1,2]
C1711351
UMLS CUI [1,3]
C0004793
UMLS CUI [1,4]
C1999228
SubstanceNucleicAcid.subunit.fivePrime
Beschrijving

The nucleotide present at the 5’ terminal shall be specified based on a controlled vocabulary. Since the sequence is represented from the 5' to the 3' end, the 5’ prime nucleotide is the letter at the first position in the sequence. A separate representation would be redundant.

Datatype

text

Alias
UMLS CUI [1,1]
C0028606
UMLS CUI [1,2]
C1711351
UMLS CUI [1,3]
C0028630
UMLS CUI [1,4]
C1883644
SubstanceNucleicAcid.subunit.linkage.connectivity
Beschrijving

The entity that links the sugar residues together should also be captured for nearly all naturally occurring nucleic acid the linkage is a phosphate group. For many synthetic oligonucleotides phosphorothioate linkages are often seen. Linkage connectivity is assumed to be 3’-5’. If the linkage is either 3’-3’ or 5’-5’ this should be specified.

Datatype

text

Alias
UMLS CUI [1,1]
C0028606
UMLS CUI [1,2]
C1711351
UMLS CUI [1,3]
C0006999
UMLS CUI [1,4]
C1551338
SubstanceNucleicAcid.subunit.linkage.residueSite
Beschrijving

SubstanceNucleicAcid.subunit.linkage.residueSite

Datatype

text

Alias
UMLS CUI [1,1]
C0028606
UMLS CUI [1,2]
C1711351
UMLS CUI [1,3]
C0006999
UMLS CUI [1,4]
C1709915
UMLS CUI [1,5]
C0205145
SubstanceNucleicAcid.subunit.sugar.residueSite
Beschrijving

The residues that contain a given sugar will be captured. The order of given residues will be captured in the 5‘-3‘direction consistent with the base sequences listed above.

Datatype

text

Alias
UMLS CUI [1,1]
C0028606
UMLS CUI [1,2]
C1711351
UMLS CUI [1,3]
C0242209
UMLS CUI [1,4]
C1709915
UMLS CUI [1,5]
C0205145
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Similar models

Resource Substance Nucleic Acid (0)

1 Formulieren
Name
Type
Description | Question | Decode (Coded Value)
Datatype
Alias
Item Group
SubstanceNucleicAcid (0)
C0439861 (UMLS CUI-1)
C0028606 (UMLS CUI-2)
SubstanceNucleicAcid.sequenceType
Item
SubstanceNucleicAcid.sequenceType
text
C0028606 (UMLS CUI [1,1])
C1519249 (UMLS CUI [1,2])
C0332307 (UMLS CUI [1,3])
C0004793 (UMLS CUI [2,1])
C0332307 (UMLS CUI [2,2])
SubstanceNucleicAcid.numberOfSubunits
Item
SubstanceNucleicAcid.numberOfSubunits
integer
C0028606 (UMLS CUI [1,1])
C1711351 (UMLS CUI [1,2])
C0449788 (UMLS CUI [1,3])
SubstanceNucleicAcid.areaOfHybridisation
Item
SubstanceNucleicAcid.areaOfHybridisation
text
C0028602 (UMLS CUI [1,1])
C0205146 (UMLS CUI [1,2])
SubstanceNucleicAcid.oligoNucleotideType
Item
SubstanceNucleicAcid.oligoNucleotideType
text
C0028606 (UMLS CUI [1,1])
C0028953 (UMLS CUI [1,2])
C0332307 (UMLS CUI [1,3])
SubstanceNucleicAcid.subunit.subunit
Item
SubstanceNucleicAcid.subunit.subunit
integer
C0918012 (UMLS CUI [1,1])
C1519249 (UMLS CUI [1,2])
C0205132 (UMLS CUI [1,3])
C0028606 (UMLS CUI [1,4])
C1711351 (UMLS CUI [1,5])
C0442797 (UMLS CUI [1,6])
C1444754 (UMLS CUI [1,7])
SubstanceNucleicAcid.subunit.sequence
Item
SubstanceNucleicAcid.subunit.sequence
text
C0028606 (UMLS CUI [1,1])
C1711351 (UMLS CUI [1,2])
C0004793 (UMLS CUI [1,3])
SubstanceNucleicAcid.subunit.length
Item
SubstanceNucleicAcid.subunit.length
integer
C0028606 (UMLS CUI [1,1])
C1711351 (UMLS CUI [1,2])
C1444754 (UMLS CUI [1,3])
SubstanceNucleicAcid.subunit.sequenceAttachment
Item
SubstanceNucleicAcid.subunit.sequenceAttachment
text
C0028606 (UMLS CUI [1,1])
C1711351 (UMLS CUI [1,2])
C0004793 (UMLS CUI [1,3])
C1999228 (UMLS CUI [1,4])
SubstanceNucleicAcid.subunit.fivePrime
Item
SubstanceNucleicAcid.subunit.fivePrime
text
C0028606 (UMLS CUI [1,1])
C1711351 (UMLS CUI [1,2])
C0028630 (UMLS CUI [1,3])
C1883644 (UMLS CUI [1,4])
SubstanceNucleicAcid.subunit.linkage.connectivity
Item
SubstanceNucleicAcid.subunit.linkage.connectivity
text
C0028606 (UMLS CUI [1,1])
C1711351 (UMLS CUI [1,2])
C0006999 (UMLS CUI [1,3])
C1551338 (UMLS CUI [1,4])
SubstanceNucleicAcid.subunit.linkage.residueSite
Item
SubstanceNucleicAcid.subunit.linkage.residueSite
text
C0028606 (UMLS CUI [1,1])
C1711351 (UMLS CUI [1,2])
C0006999 (UMLS CUI [1,3])
C1709915 (UMLS CUI [1,4])
C0205145 (UMLS CUI [1,5])
SubstanceNucleicAcid.subunit.sugar.residueSite
Item
SubstanceNucleicAcid.subunit.sugar.residueSite
text
C0028606 (UMLS CUI [1,1])
C1711351 (UMLS CUI [1,2])
C0242209 (UMLS CUI [1,3])
C1709915 (UMLS CUI [1,4])
C0205145 (UMLS CUI [1,5])
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