ID

35293

Beschreibung

OMOP Common Data Model (CDM) Observation The OBSERVATION table captures clinical facts about a Person obtained in the context of examination, questioning or a procedure. Any data that cannot be represented by any other domains, such as social and lifestyle facts, medical history, family history, etc. are recorded here. OMOP Common Data Model Version 6.0 Specifications 11October2018. The Observational Medical Outcomes Partnership (OMOP) was a public-private partnership established to inform the appropriate use of observational healthcare databases for studying the effects of medical products. © 2014 Observational Health Data Sciences and Informatics This work is based on work by the Observational Medical Outcomes Partnership (OMOP) and used under license from the FNIH at http://omop.fnih.org/publiclicense. Version updated on 26.02.2019, from https://github.com/OHDSI/CommonDataModel/wiki/OBSERVATION Observations differ from Measurements in that they do not require a standardized test or some other activity to generate clinical fact. Typical observations are medical history, family history, the stated need for certain treatment, social circumstances, lifestyle choices, healthcare utilization patterns, etc. If the generation clinical facts requires a standardized testing such as lab testing or imaging and leads to a standardized result, the data item is recorded in the MEASUREMENT table. If the clinical fact observed determines a sign, symptom, diagnosis of a disease or other medical condition, it is recorded in the CONDITION_OCCURRENCE table. Valid Observation Concepts are not enforced to be from any domain. They still should be Standard Concepts, and they typically belong to the 'Observation' or sometimes 'Measurement' domain. Observations can be stored as attribute value pairs, with the attribute as the Observation Concept and the value representing the clinical fact. This fact can be a Concept (stored in VALUE_AS_CONCEPT), a numerical value (VALUE_AS_NUMBER), a verbatim string (VALUE_AS_STRING), or a datetime (VALUE_AS_DATETIME). Even though Observations do not have an explicit result, the clinical fact can be stated separately from the type of Observation in the VALUE_AS_* fields. For facts represented as Concepts no domain membership is enforced. When storing patient responses to survey questions, each record in the OBSERVATION table represents a single question/response pair and is linked to a specific survey/questionnaire using OBSERVATION.OBSERVATION_EVENT_ID and SURVEY_CONDUCT.SURVEY_CONDUCT_ID. An individual survey question can have multiple responses to a question (e.g. which of these items relate to you, a,b,c,...?). Each response is stored as a separate record in the OBSERVATION table. The question / answer OBSERVATION record is linked to the patient questionnaire used for collecting the data using two new fields in the OBSERVATION table; OBS_EVENT_FIELD_CONCEPT_ID and OBSERVATION_EVENT_ID: OBS_EVENT_FIELD_CONCEPT_ID for any survey related observations contains the concept that refers to the field SURVEY_CONDUCT_ID and OBSERVATION_EVENT_ID contains the actual SURVEY_CONDUCT_ID of the specific survey. This construct can be used for other observation groupings. The OBSERVATION table can also store survey scoring results. Many validated PRO questionnaires have scoring algorithms (many of which proprietary) that return an overall patient score based on the answers provided. Survey scores are identified by their OBSERVATION_CONCEPT_ID and are linked back to the scored survey using the same EVENT_FIELD construct described above. In the name/value pair model, the name (question) is stored as OBSERVATION_CONCEPT_ID and the value (answer) is stored as OBSERVATION_AS_CONCEPT_ID where the answer is categorical and is defined as a concept in the concept table, OBSERVATION_AS_NUMBER where the answer is numeric, OBSERVATION_AS_STRING where the answer is a free text string or OBSERVATION_AS_DATETIME.

Link

http://omop.fnih.org/publiclicense

Stichworte

Versionen (5)
  1. 04/01/2017 04/01/2017 -
  2. 18/02/2019 18/02/2019 -
  3. 18/02/2019 18/02/2019 -
  4. 26/02/2019 26/02/2019 -
  5. 26/02/2019 26/02/2019 -
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Observational Medical Outcomes Partnership (OMOP)

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26 de fevereiro de 2019

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OMOP Common Data Model (CDM) Observation

Englisch

OMOP Common Data Model (CDM) Observation

1 Formulare  
Observation
Beschreibung

Observation

Alias
UMLS CUI-1
C0700325
UMLS CUI-2
C2708733
UMLS CUI-3
C1955348
Observation ID
Beschreibung

A unique identifier for each observation.

Datentyp

integer

Alias
UMLS CUI [1,1]
C0700325
UMLS CUI [1,2]
C1300638
Person ID
Beschreibung

A foreign key identifier to the person about whom the observation was recorded. The demographic details of that person are stored in the PERSON table.

Datentyp

integer

Alias
UMLS CUI [1,1]
C0027361
UMLS CUI [1,2]
C1300638
Observation concept ID
Beschreibung

A foreign key to the standard observation concept identifier in the Standardized Vocabularies. Each survey response record is the response to a specific question identified by the OBSERVATION_CONCEPT_ID. This concept ID is a unique question contained in the CONCEPT table.

Datentyp

integer

Alias
UMLS CUI [1,1]
C0700325
UMLS CUI [1,2]
C0178566
UMLS CUI [1,3]
C1300638
Observation date
Beschreibung

The date of the observation.

Datentyp

date

Alias
UMLS CUI [1,1]
C0700325
UMLS CUI [1,2]
C0011008
Observation datetime
Beschreibung

The date and time of the observation.

Datentyp

datetime

Alias
UMLS CUI [1,1]
C0700325
UMLS CUI [1,2]
C0011008
UMLS CUI [1,3]
C0040223
Observation type concept ID
Beschreibung

A foreign key to the predefined concept identifier in the Standardized Vocabularies reflecting the type of the observation.

Datentyp

integer

Alias
UMLS CUI [1,1]
C0700325
UMLS CUI [1,2]
C0332307
UMLS CUI [1,3]
C0178566
UMLS CUI [1,4]
C1300638
Value as number
Beschreibung

The observation result stored as a number. This is applicable to observations where the result is expressed as a numeric value.

Datentyp

float

Alias
UMLS CUI [1,1]
C0700325
UMLS CUI [1,2]
C1522609
Value as string
Beschreibung

The observation result stored as a string. This is applicable to observations where the result is expressed as verbatim text. (Type varchar(60))

Datentyp

text

Alias
UMLS CUI [1,1]
C0700325
UMLS CUI [1,2]
C1547402
Value as concept ID
Beschreibung

A foreign key to an observation result stored as a concept identifier. This is applicable to observations where the result can be expressed as a standard concept from the Standardized Vocabularies (e.g., positive/negative, present/absent, low/high, etc.). Valid Concepts of the VALUE AS CONCEPT field are not enforced, but typically belong to the 'Meas Value' domain. Note that the value of VALUE_AS_CONCEPT_ID may be provided through mapping from a source Concept which contains the content of the Observation. In those situations, the CONCEPT_RELATIONSHIP table in addition to the 'Maps to' record contains a second record with the relationship_id set to 'Maps to value'.

Datentyp

integer

Alias
UMLS CUI [1,1]
C1522609
UMLS CUI [1,2]
C0178566
UMLS CUI [1,3]
C1300638
Qualifier concept ID
Beschreibung

A foreign key to a standard concept identifier for a qualifier (e.g., severity of drug-drug interaction alert). The QUALIFIER_CONCEPT_ID field contains all attributes specifying the clinical fact further, such as as degrees, severities, drug-drug interaction alerts etc.

Datentyp

integer

Alias
UMLS CUI [1,1]
C1514623
UMLS CUI [1,2]
C0178566
UMLS CUI [1,3]
C1300638
Unit concept ID
Beschreibung

A foreign key to a standard concept identifier of measurement units in the Standardized Vocabularies.

Datentyp

integer

Alias
UMLS CUI [1,1]
C1519795
UMLS CUI [1,2]
C0178566
UMLS CUI [1,3]
C1300638
Provider ID
Beschreibung

A foreign key to the provider in the provider table who was responsible for making the observation. The Provider making the observation is recorded through a reference to the PROVIDER table. This information is not always available.

Datentyp

integer

Alias
UMLS CUI [1,1]
C1138603
UMLS CUI [1,2]
C1300638
Visit occurrence ID
Beschreibung

A foreign key to the visit in the visit occurence table during which the observation was recorded. The Visit during which the Observation was made is recorded through a reference to the VISIT_OCCURRENCE table. This information is not always available.

Datentyp

integer

Alias
UMLS CUI [1,1]
C1512346
UMLS CUI [1,2]
C2745955
UMLS CUI [1,3]
C1300638
Visit detail ID
Beschreibung

A foreign key to the visit in the VISIT_DETAIL table during which the observation was recorded. The Visit Detail during which the Observation was made is recorded through a reference to the VISIT_DETAIL table. This information is not always available.

Datentyp

integer

Alias
UMLS CUI [1,1]
C1512346
UMLS CUI [1,2]
C1522508
UMLS CUI [1,3]
C1300638
Observation source value
Beschreibung

The observation code as it appears in the source data. This code is mapped to a standard concept in the Standardized Vocabularies and the original code is stored here for reference. (Type varchar(50))

Datentyp

text

Alias
UMLS CUI [1,1]
C0700325
UMLS CUI [1,2]
C0449416
UMLS CUI [1,3]
C0805701
UMLS CUI [1,4]
C0600091
Observation source concept ID
Beschreibung

A foreign key to a concept that refers to the code used in the source.

Datentyp

integer

Alias
UMLS CUI [1,1]
C0700325
UMLS CUI [1,2]
C0449416
UMLS CUI [1,3]
C0178566
UMLS CUI [1,4]
C1300638
Unit source value
Beschreibung

The source code for the unit as it appears in the source data. This code is mapped to a standard unit concept in the Standardized Vocabularies and the original code is stored here for reference. (Type varchar(50))

Datentyp

text

Alias
UMLS CUI [1,1]
C1519795
UMLS CUI [1,2]
C0449416
UMLS CUI [1,3]
C0805701
Qualifier source value
Beschreibung

The source value associated with a qualifier to characterize the observation. (Type varchar(50))

Datentyp

text

Alias
UMLS CUI [1,1]
C1514623
UMLS CUI [1,2]
C0449416
UMLS CUI [1,3]
C0805701
UMLS CUI [1,4]
C0600091
Observation event ID
Beschreibung

A foreign key to an event table (e.g., PROCEDURE_OCCURRENCE_ID).

Datentyp

integer

Alias
UMLS CUI [1,1]
C0700325
UMLS CUI [1,2]
C0441471
UMLS CUI [1,3]
C1300638
Observation event field concept ID
Beschreibung

A foreign key that refers to a Standard Concept identifier in the Standardized Vocabularies referring to the field represented in the OBSERVATION EVENT ID.

Datentyp

integer

Alias
UMLS CUI [1,1]
C0700325
UMLS CUI [1,2]
C0441471
UMLS CUI [1,3]
C0178566
UMLS CUI [1,4]
C1300638
Value as datetime
Beschreibung

The observation result stored as a datetime value. This is applicable to observations where the result is expressed as a point in time.

Datentyp

integer

Alias
UMLS CUI [1,1]
C0700325
UMLS CUI [1,2]
C0011008
UMLS CUI [1,3]
C0040223
UMLS CUI [1,4]
C1522609
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Ähnliche Modelle

OMOP Common Data Model (CDM) Observation

1 Formulare
Name
Typ
Description | Question | Decode (Coded Value)
Datentyp
Alias
Item Group
Observation
C0700325 (UMLS CUI-1)
C2708733 (UMLS CUI-2)
C1955348 (UMLS CUI-3)
Observation ID
Item
Observation ID
integer
C0700325 (UMLS CUI [1,1])
C1300638 (UMLS CUI [1,2])
Person ID
Item
Person ID
integer
C0027361 (UMLS CUI [1,1])
C1300638 (UMLS CUI [1,2])
Observation concept ID
Item
Observation concept ID
integer
C0700325 (UMLS CUI [1,1])
C0178566 (UMLS CUI [1,2])
C1300638 (UMLS CUI [1,3])
Observation date
Item
Observation date
date
C0700325 (UMLS CUI [1,1])
C0011008 (UMLS CUI [1,2])
Observation datetime
Item
Observation datetime
datetime
C0700325 (UMLS CUI [1,1])
C0011008 (UMLS CUI [1,2])
C0040223 (UMLS CUI [1,3])
Observation type concept ID
Item
Observation type concept ID
integer
C0700325 (UMLS CUI [1,1])
C0332307 (UMLS CUI [1,2])
C0178566 (UMLS CUI [1,3])
C1300638 (UMLS CUI [1,4])
Value as number
Item
Value as number
float
C0700325 (UMLS CUI [1,1])
C1522609 (UMLS CUI [1,2])
Value as string
Item
Value as string
text
C0700325 (UMLS CUI [1,1])
C1547402 (UMLS CUI [1,2])
Value as concept ID
Item
Value as concept ID
integer
C1522609 (UMLS CUI [1,1])
C0178566 (UMLS CUI [1,2])
C1300638 (UMLS CUI [1,3])
Qualifier concept ID
Item
Qualifier concept ID
integer
C1514623 (UMLS CUI [1,1])
C0178566 (UMLS CUI [1,2])
C1300638 (UMLS CUI [1,3])
Unit concept ID
Item
Unit concept ID
integer
C1519795 (UMLS CUI [1,1])
C0178566 (UMLS CUI [1,2])
C1300638 (UMLS CUI [1,3])
Provider ID
Item
Provider ID
integer
C1138603 (UMLS CUI [1,1])
C1300638 (UMLS CUI [1,2])
Visit occurrence ID
Item
Visit occurrence ID
integer
C1512346 (UMLS CUI [1,1])
C2745955 (UMLS CUI [1,2])
C1300638 (UMLS CUI [1,3])
Visit detail ID
Item
Visit detail ID
integer
C1512346 (UMLS CUI [1,1])
C1522508 (UMLS CUI [1,2])
C1300638 (UMLS CUI [1,3])
Observation source value
Item
Observation source value
text
C0700325 (UMLS CUI [1,1])
C0449416 (UMLS CUI [1,2])
C0805701 (UMLS CUI [1,3])
C0600091 (UMLS CUI [1,4])
Observation source concept ID
Item
Observation source concept ID
integer
C0700325 (UMLS CUI [1,1])
C0449416 (UMLS CUI [1,2])
C0178566 (UMLS CUI [1,3])
C1300638 (UMLS CUI [1,4])
Unit source value
Item
Unit source value
text
C1519795 (UMLS CUI [1,1])
C0449416 (UMLS CUI [1,2])
C0805701 (UMLS CUI [1,3])
Qualifier source value
Item
Qualifier source value
text
C1514623 (UMLS CUI [1,1])
C0449416 (UMLS CUI [1,2])
C0805701 (UMLS CUI [1,3])
C0600091 (UMLS CUI [1,4])
Observation event ID
Item
Observation event ID
integer
C0700325 (UMLS CUI [1,1])
C0441471 (UMLS CUI [1,2])
C1300638 (UMLS CUI [1,3])
Observation event field concept ID
Item
Observation event field concept ID
integer
C0700325 (UMLS CUI [1,1])
C0441471 (UMLS CUI [1,2])
C0178566 (UMLS CUI [1,3])
C1300638 (UMLS CUI [1,4])
Value as datetime
Item
Value as datetime
integer
C0700325 (UMLS CUI [1,1])
C0011008 (UMLS CUI [1,2])
C0040223 (UMLS CUI [1,3])
C1522609 (UMLS CUI [1,4])
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