ID

35112

Description

OMOP Common Data Model (CDM) Vocabulary The VOCABULARY table includes a list of the Vocabularies collected from various sources or created de novo by the OMOP community. This reference table is populated with a single record for each Vocabulary source and includes a descriptive name and other associated attributes for the Vocabulary. OMOP Common Data Model Specifications Version 5.0 The Observational Medical Outcomes Partnership (OMOP) was a public-private partnership established to inform the appropriate use of observational healthcare databases for studying the effects of medical products. © 2014 Observational Health Data Sciences and Informatics This work is based on work by the Observational Medical Outcomes Partnership (OMOP) and used under license from the FNIH at http://omop.fnih.org/publiclicense. Version updated on 18.02.2019, from https://github.com/OHDSI/CommonDataModel/wiki/VOCABULARY There is one record for each Vocabulary. One Vocabulary source or vendor can issue several Vocabularies, each of them creating their own record in the VOCABULARY table. However, the choice of whether a Vocabulary contains Concepts of different Concept Classes, or when these different classes constitute separate Vocabularies cannot precisely be decided based on the definition of what constitutes a Vocabulary. For example, the ICD-9 Volume 1 and 2 codes (ICD9CM, containing predominantly conditions and some procedures and observations) and the ICD-9 Volume 3 codes (ICD9Proc, containing predominantly procedures) are realized as two different Vocabularies. On the other hand, SNOMED-CT codes of the class Condition and those of the class Procedure are part of one and the same Vocabulary. Please refer to the Standardized Vocabularies specifications for details of each Vocabulary.

Link

http://omop.fnih.org/publiclicense

Keywords

Versions (3)
  1. 1/4/17 1/4/17 -
  2. 2/18/19 2/18/19 -
  3. 2/26/19 2/26/19 -
Copyright Holder

Observational Medical Outcomes Partnership (OMOP)

Uploaded on

February 18, 2019

DOI

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License

Creative Commons BY-NC 3.0
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OMOP Common Data Model (CDM) Vocabulary

English

OMOP Common Data Model (CDM) Vocabulary

1 forms  
Vocabulary
Description

Vocabulary

Alias
UMLS CUI-1
C0042926
Vocabulary ID
Description

A unique identifier for each Vocabulary, such as ICD9CM, SNOMED, Visit. The VOCABULARY_ID field contains an alphanumerical identifier, that can also be used as the abbreviation of the Vocabulary name. The record with VOCABULARY_ID = 'None' is reserved to contain information regarding the current version of the Entire Standardized Vocabularies.

Data type

text

Alias
UMLS CUI [1,1]
C0042926
UMLS CUI [1,2]
C1300638
Vocabulary Name
Description

The name describing the vocabulary, for example "International Classification of Diseases, Ninth Revision, Clinical Modification, Volume 1 and 2 (NCHS)" etc. The VOCABULARY_NAME field contains the full official name of the Vocabulary, as well as the source or vendor in parenthesis.

Data type

text

Alias
UMLS CUI [1,1]
C0042926
UMLS CUI [1,2]
C0027365
Vocabulary reference
Description

External reference to documentation or available download of the about the vocabulary.

Data type

text

Alias
UMLS CUI [1,1]
C0042926
UMLS CUI [1,2]
C1706462
Vocabulary version
Description

Version of the vocabulary as indicated in the source.

Data type

text

Alias
UMLS CUI [1,1]
C0042926
UMLS CUI [1,2]
C0333052
Vocabulary concept ID
Description

A foreign key that refers to a standard concept identifier in the CONCEPT table for the Vocabulary the VOCABULARY record belongs to. Each Vocabulary has an entry in the CONCEPT table, which is recorded in the VOCABULARY_CONCEPT_ID field. This is for purposes of creating a closed Information Model, where all entities in the OMOP CDM are covered by a unique Concept.

Data type

integer

Alias
UMLS CUI [1,1]
C0042926
UMLS CUI [1,2]
C0178566
UMLS CUI [1,3]
C1300638
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Similar models

OMOP Common Data Model (CDM) Vocabulary

1 forms
Name
Type
Description | Question | Decode (Coded Value)
Data type
Alias
Item Group
Vocabulary
C0042926 (UMLS CUI-1)
Vocabulary ID
Item
Vocabulary ID
text
C0042926 (UMLS CUI [1,1])
C1300638 (UMLS CUI [1,2])
Vocabulary Name
Item
Vocabulary Name
text
C0042926 (UMLS CUI [1,1])
C0027365 (UMLS CUI [1,2])
Vocabulary reference
Item
Vocabulary reference
text
C0042926 (UMLS CUI [1,1])
C1706462 (UMLS CUI [1,2])
Vocabulary version
Item
Vocabulary version
text
C0042926 (UMLS CUI [1,1])
C0333052 (UMLS CUI [1,2])
Vocabulary concept ID
Item
Vocabulary concept ID
integer
C0042926 (UMLS CUI [1,1])
C0178566 (UMLS CUI [1,2])
C1300638 (UMLS CUI [1,3])
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