ID

35037

Description

OMOP Common Data Model (CDM) Procedure occurrence The PROCEDURE_OCCURRENCE table contains records of activities or processes ordered by, or carried out by, a healthcare provider on the patient to have a diagnostic or therapeutic purpose. Procedures are present in various data sources in different forms with varying levels of standardization. For example: Medical Claims include procedure codes that are submitted as part of a claim for health services rendered, including procedures performed. Electronic Health Records that capture procedures as orders. The Observational Medical Outcomes Partnership (OMOP) was a public-private partnership established to inform the appropriate use of observational healthcare databases for studying the effects of medical products. © 2014 Observational Health Data Sciences and Informatics. ersion updated on 12.02.2019, from https://github.com/OHDSI/CommonDataModel/wiki/PROCEDURE_OCCURENCE. Valid Procedure Concepts belong to the 'Procedure' domain. Procedure Concepts are based on a variety of vocabularies: SNOMED-CT, ICD-9-Proc, CPT-4, HCPCS and OPCS-4, but also atypical Vocabularies such as ICD-9-CM or MedDRA. Procedures are expected to be carried out within one day and therefore have no end date. Procedures could involve the application of a drug, in which case the procedural component is recorded in the procedure table and simultaneously the administered drug in the drug exposure table when both the procedural component and drug are identifiable. If the quantity value is omitted, a single procedure is assumed. The Procedure Type defines from where the Procedure Occurrence is drawn or inferred. For administrative claims records the type indicates whether a Procedure was primary or secondary and their relative positioning within a claim. The Visit during which the procedure was performed is recorded through a reference to the VISIT_OCCURRENCE table. This information is not always available. The Visit Detail during with the procedure was performed is recorded through a reference to the VISIT_DETAIL table. This information is not always available. The Provider carrying out the procedure is recorded through a reference to the PROVIDER table. This information is not always available. When dealing with duplicate records, the ETL must determine whether to sum them up into one record or keep them separate. Things to consider are: Same Procedure Same PROCEDURE_DATETIME Same Visit Occurrence or Visit Detail Same Provider Same Modifier for Procedures Same COST_ID If a Procedure has a quantity of '0' in the source, this should default to '1' in the ETL. If there is a record in the source it can be assumed the exposure occurred at least once.

Link

https://github.com/OHDSI/CommonDataModel/wiki/PROCEDURE_OCCURENCE

Keywords

Versions (4)
  1. 1/4/17 1/4/17 -
  2. 2/12/19 2/12/19 -
  3. 2/12/19 2/12/19 -
  4. 2/28/19 2/28/19 -
Copyright Holder

Observational Medical Outcomes Partnership (OMOP)

Uploaded on

February 12, 2019

DOI

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License

Creative Commons BY-NC 3.0
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OMOP Common Data Model (CDM) Procedure occurrence

English

OMOP Common Data Model (CDM) Procedure occurrence

1 forms  
Procedure occurrence
Description

Procedure occurrence

Alias
UMLS CUI-1
C0184661
UMLS CUI-2
C0087111
UMLS CUI-3
C2745955
Procedure occurrence ID
Description

A system-generated unique identifier for each procedure occurrence.

Data type

integer

Alias
UMLS CUI [1,1]
C0184661
UMLS CUI [1,2]
C2745955
UMLS CUI [1,3]
C1300638
Person ID
Description

A foreign key identifier to the Person who is subjected to the Procedure. The demographic details of that Person are stored in the PERSON table.

Data type

integer

Alias
UMLS CUI [1]
C2348585
Procedure concept ID
Description

A foreign key that refers to a standard procedure concept identifier in the Standardized Vocabularies.

Data type

integer

Alias
UMLS CUI [1,1]
C0184661
UMLS CUI [1,2]
C0178566
UMLS CUI [1,3]
C1300638
Procedure date
Description

The date on which the procedure was performed.

Data type

date

Alias
UMLS CUI [1,1]
C0184661
UMLS CUI [1,2]
C0011008
Procedure datetime
Description

The date and time on which the Procedure was performed.

Data type

datetime

Alias
UMLS CUI [1,1]
C0184661
UMLS CUI [1,2]
C0011008
UMLS CUI [2,1]
C0184661
UMLS CUI [2,2]
C0040223
Procedure type concept ID
Description

A foreign key to the predefined Concept identifier in the Standardized Vocabularies reflecting the type of source data from which the procedure record is derived, belonging to the 'Procedure Type' vocabulary.

Data type

integer

Alias
UMLS CUI [1,1]
C0184661
UMLS CUI [1,2]
C0332307
UMLS CUI [1,3]
C0178566
UMLS CUI [1,4]
C1300638
Modifier concept ID
Description

A foreign key to a Standard Concept identifier for a modifier to the Procedure (e.g. bilateral). These concepts are typically distinguished by 'Modifier' concept classes (e.g., 'CPT4 Modifier' as part of the 'CPT4' vocabulary).

Data type

integer

Alias
UMLS CUI [1,1]
C3542952
UMLS CUI [1,2]
C0178566
UMLS CUI [1,3]
C1300638
Procedure quantity
Description

The quantity of procedures ordered or administered.

Data type

integer

Alias
UMLS CUI [1,1]
C0184661
UMLS CUI [1,2]
C1265611
Provider ID
Description

A foreign key to the provider in the PROVIDER table who was responsible for carrying out the procedure.

Data type

integer

Alias
UMLS CUI [1,1]
C1138603
UMLS CUI [1,2]
C1300638
Visit occurence ID
Description

A foreign key to the visit in the visit table during which the procedure was carried out.

Data type

integer

Alias
UMLS CUI [1,1]
C1512346
UMLS CUI [1,2]
C2745955
UMLS CUI [1,3]
C1300638
Visit detail ID
Description

A foreign key to the Visit Detail in the VISIT_DETAIL table during which the Procedure was carried out.

Data type

integer

Alias
UMLS CUI [1,1]
C1512346
UMLS CUI [1,2]
C1522508
UMLS CUI [1,3]
C1300638
Procedure source value
Description

The source code for the procedure as it appears in the source data. This code is mapped to a standard procedure concept in the Standardized Vocabularies and the original code is, stored here for reference. Procedure source codes are typically ICD-9-Proc, CPT-4, HCPCS or OPCS-4 codes.

Data type

text

Alias
UMLS CUI [1,1]
C0184661
UMLS CUI [1,2]
C0449416
UMLS CUI [1,3]
C1522609
Procedure source concept ID
Description

A foreign key to a procedure concept that refers to the code used in the source.

Data type

integer

Alias
UMLS CUI [1,1]
C0184661
UMLS CUI [1,2]
C0449416
UMLS CUI [1,3]
C0178566
UMLS CUI [1,4]
C1300638
Modifier source value
Description

The source code for the qualifier as it appears in the source data.

Data type

text

Alias
UMLS CUI [1,1]
C1514623
UMLS CUI [1,2]
C0449416
UMLS CUI [1,3]
C1522609
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Similar models

OMOP Common Data Model (CDM) Procedure occurrence

1 forms
Name
Type
Description | Question | Decode (Coded Value)
Data type
Alias
Item Group
Procedure occurrence
C0184661 (UMLS CUI-1)
C0087111 (UMLS CUI-2)
C2745955 (UMLS CUI-3)
Procedure occurrence ID
Item
Procedure occurrence ID
integer
C0184661 (UMLS CUI [1,1])
C2745955 (UMLS CUI [1,2])
C1300638 (UMLS CUI [1,3])
Person ID
Item
Person ID
integer
C2348585 (UMLS CUI [1])
Procedure concept ID
Item
Procedure concept ID
integer
C0184661 (UMLS CUI [1,1])
C0178566 (UMLS CUI [1,2])
C1300638 (UMLS CUI [1,3])
Procedure date
Item
Procedure date
date
C0184661 (UMLS CUI [1,1])
C0011008 (UMLS CUI [1,2])
Pocedure datetime
Item
Procedure datetime
datetime
C0184661 (UMLS CUI [1,1])
C0011008 (UMLS CUI [1,2])
C0184661 (UMLS CUI [2,1])
C0040223 (UMLS CUI [2,2])
Procedure type concept ID
Item
Procedure type concept ID
integer
C0184661 (UMLS CUI [1,1])
C0332307 (UMLS CUI [1,2])
C0178566 (UMLS CUI [1,3])
C1300638 (UMLS CUI [1,4])
Modifier concept ID
Item
Modifier concept ID
integer
C3542952 (UMLS CUI [1,1])
C0178566 (UMLS CUI [1,2])
C1300638 (UMLS CUI [1,3])
Procedure quantity
Item
Procedure quantity
integer
C0184661 (UMLS CUI [1,1])
C1265611 (UMLS CUI [1,2])
Provider ID
Item
Provider ID
integer
C1138603 (UMLS CUI [1,1])
C1300638 (UMLS CUI [1,2])
Visit occurence ID
Item
Visit occurence ID
integer
C1512346 (UMLS CUI [1,1])
C2745955 (UMLS CUI [1,2])
C1300638 (UMLS CUI [1,3])
Visit detail ID
Item
Visit detail ID
integer
C1512346 (UMLS CUI [1,1])
C1522508 (UMLS CUI [1,2])
C1300638 (UMLS CUI [1,3])
Procedure source value
Item
Procedure source value
text
C0184661 (UMLS CUI [1,1])
C0449416 (UMLS CUI [1,2])
C1522609 (UMLS CUI [1,3])
Procedure source concept ID
Item
Procedure source concept ID
integer
C0184661 (UMLS CUI [1,1])
C0449416 (UMLS CUI [1,2])
C0178566 (UMLS CUI [1,3])
C1300638 (UMLS CUI [1,4])
Modifier source value
Item
Modifier source value
text
C1514623 (UMLS CUI [1,1])
C0449416 (UMLS CUI [1,2])
C1522609 (UMLS CUI [1,3])
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