ID

19478

Description

OMOP Common Data Model (CDM) Source to Concept Map The SOURCE_TO_CONCEPT_MAP table is a legacy data structure within the OMOP Common Data Model, recommended for use in extract, transform, and load (ETL) processes to maintain local source codes which are not available as concepts in the Standardized Vocabularies, and to establish mappings for each source code into a standard concept that can be used to populate the Common Data Model tables. The source to concept map table is no longer populated with content within the Standardized Vocabularies published to the OMOP community. OMOP Common Data Model Specifications Version 5.0 The Observational Medical Outcomes Partnership (OMOP) was a public-private partnership established to inform the appropriate use of observational healthcare databases for studying the effects of medical products. © 2014 Observational Health Data Sciences and Informatics This work is based on work by the Observational Medical Outcomes Partnership (OMOP) and used under license from the FNIH at http://omop.fnih.org/publiclicense.

Link

http://omop.fnih.org/publiclicense

Keywords

Versions (2)
  1. 1/4/17 1/4/17 -
  2. 2/26/19 2/26/19 -
Uploaded on

January 4, 2017

DOI

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License

Creative Commons BY-NC 3.0
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OMOP Common Data Model (CDM) Source to Concept Map

English

OMOP Common Data Model (CDM) Source to Concept Map

1 forms  
Source to Concept Map
Description

Source to Concept Map

Alias
UMLS CUI-1
C0596404
UMLS CUI-2
C0178566
UMLS CUI-3
C0449416
UMLS CUI-4
C0011001
UMLS CUI-5
C0024779
Source code
Description

The source code being translated into a standard concept.

Data type

integer

Alias
UMLS CUI [1]
C1710131
Source concept ID
Description

A foreign key to the source concept to which the source code is being mapped.

Data type

integer

Alias
UMLS CUI [1,1]
C0449416
UMLS CUI [1,2]
C0178566
UMLS CUI [1,3]
C1300638
Source vocabulary ID
Description

A foreign key to the vocabulary table defining the vocabulary of the source code that is being mapped to the Standardized Vocabularies.

Data type

text

Alias
UMLS CUI [1,1]
C0449416
UMLS CUI [1,2]
C0042926
UMLS CUI [1,3]
C1300638
Target concept ID
Description

A foreign key to the target concept to which the source code is being mapped.

Data type

integer

Alias
UMLS CUI [1,1]
C1521840
UMLS CUI [1,2]
C0178566
UMLS CUI [1,3]
C1300638
Target vocabulary ID
Description

A foreign key to the vocabulary table defining the vocabulary of the target concept.

Data type

text

Alias
UMLS CUI [1,1]
C1521840
UMLS CUI [1,2]
C0042926
UMLS CUI [1,3]
C1300638
valid start date
Description

The date when the mapping instance was first recorded.

Data type

date

Alias
UMLS CUI [1,1]
C0024779
UMLS CUI [1,2]
C0596404
UMLS CUI [1,3]
C0011008
valid end date
Description

The date when the mapping instance became invalid because it was deleted or superseded (updated) by a new relationship. Default value is 31- Dec-2099.

Data type

date

Alias
UMLS CUI [1,1]
C0024779
UMLS CUI [1,2]
C0596404
UMLS CUI [1,3]
C0011008
invalid reason
Description

Reason the mapping instance was invalidated. Possible values are D (deleted), U (replaced with an update) or NULL when valid_end_date has the default value.

Data type

text

Alias
UMLS CUI [1,1]
C0024779
UMLS CUI [1,2]
C0596404
UMLS CUI [1,3]
C3245471
UMLS CUI [1,4]
C0392360
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Similar models

OMOP Common Data Model (CDM) Source to Concept Map

1 forms
Name
Type
Description | Question | Decode (Coded Value)
Data type
Alias
Item Group
Source to Concept Map
C0596404 (UMLS CUI-1)
C0178566 (UMLS CUI-2)
C0449416 (UMLS CUI-3)
C0011001 (UMLS CUI-4)
C0024779 (UMLS CUI-5)
Source code
Item
Source code
integer
C1710131 (UMLS CUI [1])
Source concept ID
Item
Source concept ID
integer
C0449416 (UMLS CUI [1,1])
C0178566 (UMLS CUI [1,2])
C1300638 (UMLS CUI [1,3])
Source vocabulary ID
Item
Source vocabulary ID
text
C0449416 (UMLS CUI [1,1])
C0042926 (UMLS CUI [1,2])
C1300638 (UMLS CUI [1,3])
Target concept ID
Item
Target concept ID
integer
C1521840 (UMLS CUI [1,1])
C0178566 (UMLS CUI [1,2])
C1300638 (UMLS CUI [1,3])
Target vocabulary ID
Item
Target vocabulary ID
text
C1521840 (UMLS CUI [1,1])
C0042926 (UMLS CUI [1,2])
C1300638 (UMLS CUI [1,3])
valid start date
Item
valid start date
date
C0024779 (UMLS CUI [1,1])
C0596404 (UMLS CUI [1,2])
C0011008 (UMLS CUI [1,3])
valid end date
Item
valid end date
date
C0024779 (UMLS CUI [1,1])
C0596404 (UMLS CUI [1,2])
C0011008 (UMLS CUI [1,3])
invalid reason
Item
invalid reason
text
C0024779 (UMLS CUI [1,1])
C0596404 (UMLS CUI [1,2])
C3245471 (UMLS CUI [1,3])
C0392360 (UMLS CUI [1,4])
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