0 Ratings
ID

14700

Description

A standard liver panel is comprised of the following bioassays that are performed on refrigerated serum or plasma: alanine aminotransferase (ALT), aspartate aminotransferase (AST), alkaline phosphatase (ALP), bilirubin, albumin, total protein, and gamma-glutamyl transferase (GGT). ODM derived from: https://cde.nlm.nih.gov Primary source: https://www.phenxtoolkit.org/ Recent publication: Hendershot, T., Pan, H., Haines, J., Harlan, W.R., Marazita, M.L., McCarty, C.A., Ramos, E.M., and Hamilton, C.M. (2015) Using the PhenX toolkit to add standard measures to a study. Curr. Protoc. Hum. Genet. 86:1.21.1-1.21.17. doi: 10.1002/0471142905.hg0121s86 Permission to publish granted by Carol M. Hamilton.

Link

https://cde.nlm.nih.gov

Keywords

Versions (1)
  1. 4/26/16 4/26/16 -
Uploaded on

April 26, 2016

DOI

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License

Creative Commons BY-NC 3.0
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    Liver Function Assay Protocol PhenX Toolkit

    English

    Liver Function Assay Protocol PhenX Toolkit

    1 forms  
    PhenX - liver function assay protocol
    Description

    PhenX - liver function assay protocol

    Alias
    UMLS CUI-1
    C3167816 (PhenX - liver function assay protocol:-:Point in time:^Patient:-:PhenX)
    LOINC
    62967-5
    Do you have hemophilia?
    Description

    hemophilia

    Data type

    integer

    Alias
    UMLS CUI [1]
    C0684275 (Hemophilia, NOS)
    SNOMED
    90935002
    Have you received cancer chemotherapy in the past four weeks or do you anticipate such therapy in the next four weeks?
    Description

    chemotherapy

    Data type

    integer

    Alias
    UMLS CUI [1]
    C0392920 (Chemotherapy Regimen)
    SNOMED
    716872004
    Exclusion Criteria
    Description

    exclusion criteria

    Data type

    integer

    Alias
    UMLS CUI [1]
    C0680251 (Exclusion Criteria)
    Was blood drawn?
    Description

    blood draw done

    Data type

    boolean

    Alias
    UMLS CUI [1]
    C3166519 (Was blood drawn)
    LOINC
    LP124922-8
    Was full sample obtained?
    Description

    blood draw full sample

    Data type

    boolean

    Alias
    UMLS CUI [1]
    C3166525 (Was full sample obtained)
    LOINC
    LP124923-6
    Service comment: Record any comments about the blood draw, inclu ding any reasons for the tube not being drawn according to the protocol.
    Description

    service comment

    Data type

    text

    Alias
    UMLS CUI [1]
    C0485795 (Service comment 01:Impression/interpretation of study:Point in time:To be specified in another part of the message:Nominal)
    LOINC
    8251-1
    Service comment: Record comments to describe the sample during p rocessing:
    Description

    service comment

    Data type

    text

    Alias
    UMLS CUI [1]
    C0485795 (Service comment 01:Impression/interpretation of study:Point in time:To be specified in another part of the message:Nominal)
    LOINC
    8251-1
    Make of the equipment used to perform...
    Description

    make of the equipment used

    Data type

    text

    Alias
    UMLS CUI [1]
    C3176779 (Make of the equipment used:ID:Pt:^Patient:Nom:PhenX)
    LOINC
    66208-0
    Manufacturer of the equipment used to perform...
    Description

    manufacter of equipment used

    Data type

    text

    Alias
    UMLS CUI [1]
    C3176781 (Deprecated Manufacturer of the equipment used PhenX [Identifier] [PhenX])
    Repeatability of the assay
    Description

    assay repeatability

    Data type

    integer

    Alias
    UMLS CUI [1]
    C3166274 (Repeatability of the assay)
    LOINC
    LP124998-8
    Coefficient of variation for the assay
    Description

    coefficient of variation for the assay

    Data type

    float

    Alias
    UMLS CUI [1]
    C3176770 (Coefficient of variation for the assay:Num:Pt:^Patient:Qn:PhenX)
    LOINC
    66201-5
    Make of the equipment used to perform...
    Description

    make of equipment used

    Data type

    text

    Alias
    UMLS CUI [1]
    C3176779 (Make of the equipment used:ID:Pt:^Patient:Nom:PhenX)
    LOINC
    66208-0
    Manufacturer of the equipment used to perform...
    Description

    manufacturer of equipment used

    Data type

    text

    Alias
    UMLS CUI [1]
    C3176781 (Deprecated Manufacturer of the equipment used PhenX [Identifier] [PhenX])
    Repeatability of the assay
    Description

    repeatability of the assay

    Data type

    float

    Alias
    UMLS CUI [1]
    C3166274 (Repeatability of the assay)
    LOINC
    LP124998-8
    Coefficient of variation for the assay
    Description

    coefficient of variation for the assay

    Data type

    float

    Alias
    UMLS CUI [1]
    C3176770 (Coefficient of variation for the assay:Num:Pt:^Patient:Qn:PhenX)
    LOINC
    66201-5
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    Similar models

    Liver Function Assay Protocol PhenX Toolkit

    1 forms
    Name
    Type
    Description | Question | Decode (Coded Value)
    Data type
    Alias
    Item Group
    PhenX - liver function assay protocol
    C3167816 (UMLS CUI-1)
    Item
    Do you have hemophilia?
    integer
    C0684275 (UMLS CUI [1])
    hemophilia
    Code List
    Do you have hemophilia?
    CL Item
    Yes (1)
    C1705108 (UMLS CUI-1)
    CL Item
    No (2)
    C1298908 (UMLS CUI-1)
    CL Item
    Refused (3)
    C1705116 (UMLS CUI-1)
    CL Item
    Don't know (4)
    C3843613 (UMLS CUI-1)
    Item
    Have you received cancer chemotherapy in the past four weeks or do you anticipate such therapy in the next four weeks?
    integer
    C0392920 (UMLS CUI [1])
    hemophilia
    Code List
    Have you received cancer chemotherapy in the past four weeks or do you anticipate such therapy in the next four weeks?
    CL Item
    Yes (1)
    C1705108 (UMLS CUI-1)
    CL Item
    No (2)
    C1298908 (UMLS CUI-1)
    CL Item
    Refused (3)
    C1705116 (UMLS CUI-1)
    CL Item
    Don't know (4)
    C3843613 (UMLS CUI-1)
    Item
    Exclusion Criteria
    integer
    C0680251 (UMLS CUI [1])
    exclusion criteria
    Code List
    Exclusion Criteria
    CL Item
    Hemophilia  (1)
    C0684275 (UMLS CUI-1)
    CL Item
    Received cancer chemotherapy in the last 3 weeks (2)
    C3842787 (UMLS CUI-1)
    CL Item
    None – proceed with blood draw (3)
    C3842785 (UMLS CUI-1)
    blood draw done
    Item
    Was blood drawn?
    boolean
    C3166519 (UMLS CUI [1])
    blood draw full sample
    Item
    Was full sample obtained?
    boolean
    C3166525 (UMLS CUI [1])
    service comment
    Item
    Service comment: Record any comments about the blood draw, inclu ding any reasons for the tube not being drawn according to the protocol.
    text
    C0485795 (UMLS CUI [1])
    service comment
    Item
    Service comment: Record comments to describe the sample during p rocessing:
    text
    C0485795 (UMLS CUI [1])
    make of the equipment used
    Item
    Make of the equipment used to perform...
    text
    C3176779 (UMLS CUI [1])
    manufacter of equipment used
    Item
    Manufacturer of the equipment used to perform...
    text
    C3176781 (UMLS CUI [1])
    assay repeatability
    Item
    Repeatability of the assay
    integer
    C3166274 (UMLS CUI [1])
    coefficient of variation for the assay
    Item
    Coefficient of variation for the assay
    float
    C3176770 (UMLS CUI [1])
    make of equipment used
    Item
    Make of the equipment used to perform...
    text
    C3176779 (UMLS CUI [1])
    manufacturer of equipment used
    Item
    Manufacturer of the equipment used to perform...
    text
    C3176781 (UMLS CUI [1])
    repeatability of the assay
    Item
    Repeatability of the assay
    float
    C3166274 (UMLS CUI [1])
    coefficient of variation for the assay
    Item
    Coefficient of variation for the assay
    float
    C3176770 (UMLS CUI [1])
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