ID

14696

Description

This protocol provides instructions for drawing, processing, and storing blood according to the National Health and Nutrition Examination Survey (NHANES). As multiple tests must be performed to make the most accurate diagnosis of syphilis infection, the protocol also provides basic guidelines to aid comparability among different studies. ODM derived from: https://cde.nlm.nih.gov Primary source: https://www.phenxtoolkit.org/ Recent publication: Hendershot, T., Pan, H., Haines, J., Harlan, W.R., Marazita, M.L., McCarty, C.A., Ramos, E.M., and Hamilton, C.M. (2015) Using the PhenX toolkit to add standard measures to a study. Curr. Protoc. Hum. Genet. 86:1.21.1-1.21.17. doi: 10.1002/0471142905.hg0121s86 Permission to publish granted by Carol M. Hamilton.

Link

https://cde.nlm.nih.gov

Keywords

  1. 4/26/16 4/26/16 -
Uploaded on

April 26, 2016

DOI

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License

Creative Commons BY-NC 3.0

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Assay for Syphilis Protocol PhenX Toolkit

Assay for Syphilis Protocol PhenX Toolkit

Exclusion criteria - assays PhenX
Description

Exclusion criteria - assays PhenX

Alias
UMLS CUI-1
C3171883
Do you have hemophilia?
Description

hemophilia

Data type

integer

Alias
UMLS CUI [1]
C0684275
Have you received cancer chemotherapy in the past four weeks or do you anticipate such therapy in the next four weeks?
Description

chemotherapy

Data type

integer

Alias
UMLS CUI [1]
C0392920
Process variables for assays PhenX
Description

Process variables for assays PhenX

Alias
UMLS CUI-1
C3481924
Exclusion Criteria
Description

exclusion criteria

Data type

integer

Alias
UMLS CUI [1]
C0680251
Was blood drawn?
Description

blood draw done

Data type

boolean

Alias
UMLS CUI [1]
C3166519
Was full sample obtained?
Description

full sample obtained

Data type

boolean

Alias
UMLS CUI [1]
C3176022
Service comment
Description

service comment

Data type

text

Alias
UMLS CUI [1]
C0485795
Service comment
Description

service comment

Data type

text

Alias
UMLS CUI [1]
C0485795
Repeatability of the assay
Description

repeatability of the assay

Data type

float

Alias
UMLS CUI [1]
C3166274
Coefficient of variation for the assay
Description

coefficient of variation

Data type

float

Alias
UMLS CUI [1]
C3176770
Manufacturer variables for assays PhenX
Description

Manufacturer variables for assays PhenX

Alias
UMLS CUI-1
C3481925
Make of the equipment used to perform...
Description

make of equipment used

Data type

text

Alias
UMLS CUI [1]
C3176779
Manufacturer of the equipment used to perform...
Description

manufacturer of equipment used

Data type

text

Alias
UMLS CUI [1]
C3176781

Similar models

Assay for Syphilis Protocol PhenX Toolkit

Name
Type
Description | Question | Decode (Coded Value)
Data type
Alias
Item Group
Exclusion criteria - assays PhenX
C3171883 (UMLS CUI-1)
Item
Do you have hemophilia?
integer
C0684275 (UMLS CUI [1])
Code List
Do you have hemophilia?
CL Item
Yes (1)
C1705108 (UMLS CUI-1)
CL Item
No (2)
C1298908 (UMLS CUI-1)
CL Item
Refused (7)
C1705116 (UMLS CUI-1)
CL Item
Don't know (9)
C3843613 (UMLS CUI-1)
Item
Have you received cancer chemotherapy in the past four weeks or do you anticipate such therapy in the next four weeks?
integer
C0392920 (UMLS CUI [1])
Code List
Have you received cancer chemotherapy in the past four weeks or do you anticipate such therapy in the next four weeks?
CL Item
Yes (1)
C1705108 (UMLS CUI-1)
CL Item
No (2)
C1298908 (UMLS CUI-1)
CL Item
Refused (7)
C1705116 (UMLS CUI-1)
CL Item
Don't know (9)
C3843613 (UMLS CUI-1)
Item Group
Process variables for assays PhenX
C3481924 (UMLS CUI-1)
Item
Exclusion Criteria
integer
C0680251 (UMLS CUI [1])
Code List
Exclusion Criteria
CL Item
Hemophilia (1)
C0684275 (UMLS CUI-1)
CL Item
Received cancer chemotherapy in the last 3 weeks (2)
C3842787 (UMLS CUI-1)
CL Item
None – proceed with blood draw (3)
C3842785 (UMLS CUI-1)
blood draw done
Item
Was blood drawn?
boolean
C3166519 (UMLS CUI [1])
full sample obtained
Item
Was full sample obtained?
boolean
C3176022 (UMLS CUI [1])
service comment
Item
Service comment
text
C0485795 (UMLS CUI [1])
service comment
Item
Service comment
text
C0485795 (UMLS CUI [1])
repeatability of the assay
Item
Repeatability of the assay
float
C3166274 (UMLS CUI [1])
coefficient of variation
Item
Coefficient of variation for the assay
float
C3176770 (UMLS CUI [1])
Item Group
Manufacturer variables for assays PhenX
C3481925 (UMLS CUI-1)
make of equipment used
Item
Make of the equipment used to perform...
text
C3176779 (UMLS CUI [1])
manufacturer of equipment used
Item
Manufacturer of the equipment used to perform...
text
C3176781 (UMLS CUI [1])

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