ID

14684

Description

This protocol includes instructions for drawing, processing and storing blood according to the Type 1 Diabetes Genetics Consortium (T1DGC) Manual of Operations. Human Leukocyte Antigen is measured by using the linear array genotyping system method. ODM derived from: https://cde.nlm.nih.gov Primary source: https://www.phenxtoolkit.org/ Recent publication: Hendershot, T., Pan, H., Haines, J., Harlan, W.R., Marazita, M.L., McCarty, C.A., Ramos, E.M., and Hamilton, C.M. (2015) Using the PhenX toolkit to add standard measures to a study. Curr. Protoc. Hum. Genet. 86:1.21.1-1.21.17. doi: 10.1002/0471142905.hg0121s86 Permission to publish granted by Carol M. Hamilton.

Link

https://cde.nlm.nih.gov

Keywords

Versions (1)
  1. 4/26/16 4/26/16 -
Uploaded on

April 26, 2016

DOI

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License

Creative Commons BY-NC 3.0
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Assay for Human Leukocyte Antigen (HLA) Genotyping Protocol PhenX Toolkit

English

Assay for Human Leukocyte Antigen (HLA) Genotyping Protocol PhenX Toolkit

1 forms  
Collection date of Blood
Description

Collection date of Blood

Date of blood collection
Description

date of blood collection

Data type

datetime

Alias
UMLS CUI [1,1]
C0190979
UMLS CUI [1,2]
C0011008
Process variables for assays - human leukocyte antigen - HLA PhenX
Description

Process variables for assays - human leukocyte antigen - HLA PhenX

Was blood drawn?
Description

blood draw done

Data type

boolean

Alias
UMLS CUI [1]
C3166519
Was full sample obtained?
Description

full sample obtained

Data type

boolean

Alias
UMLS CUI [1]
C3176022
Service comment
Description

service comment

Data type

text

Alias
UMLS CUI [1]
C0485795
Service comment
Description

service comment

Data type

text

Alias
UMLS CUI [1]
C0485795
Repeatability of the assay
Description

assay repeatability

Data type

float

Alias
UMLS CUI [1]
C3166274
Coefficient of variation for the assay
Description

coefficient of variation

Data type

float

Alias
UMLS CUI [1]
C3176770
Manufacturer variables for assays PhenX
Description

Manufacturer variables for assays PhenX

Make of the equipment used to perform...
Description

make of equipment used

Data type

text

Alias
UMLS CUI [1]
C3176779
Manufacturer of the equipment used to perform...
Description

manufacturer of equipment used

Data type

text

Alias
UMLS CUI [1]
C3176781
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Similar models

Assay for Human Leukocyte Antigen (HLA) Genotyping Protocol PhenX Toolkit

1 forms
Name
Type
Description | Question | Decode (Coded Value)
Data type
Alias
Item Group
Collection date of Blood
date of blood collection
Item
Date of blood collection
datetime
C0190979 (UMLS CUI [1,1])
C0011008 (UMLS CUI [1,2])
Item Group
Process variables for assays - human leukocyte antigen - HLA PhenX
blood draw done
Item
Was blood drawn?
boolean
C3166519 (UMLS CUI [1])
full sample obtained
Item
Was full sample obtained?
boolean
C3176022 (UMLS CUI [1])
service comment
Item
Service comment
text
C0485795 (UMLS CUI [1])
service comment
Item
Service comment
text
C0485795 (UMLS CUI [1])
assay repeatability
Item
Repeatability of the assay
float
C3166274 (UMLS CUI [1])
coefficient of variation
Item
Coefficient of variation for the assay
float
C3176770 (UMLS CUI [1])
Item Group
Manufacturer variables for assays PhenX
make of equipment used
Item
Make of the equipment used to perform...
text
C3176779 (UMLS CUI [1])
manufacturer of equipment used
Item
Manufacturer of the equipment used to perform...
text
C3176781 (UMLS CUI [1])
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