ID

46166

Descrição

Principal Investigator: Craig Wong, MD, MPH, University of New Mexico, Health Sciences Center and UNM Children's Hospital, Albuquerque, NM, USA MeSH: Kidney Diseases,Renal Insufficiency,Renal Insufficiency, Chronic https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs000650 The Pediatric Investigation for Genetic Factors Associated with Renal Progression (PediGFR) (RO1-DK082394) is an international collaborative study among three large prospective cohort studies of children with chronic kidney disease. The participating parent cohort studies are the "Chronic Kidney Disease in Children (CKiD)", the "Effect of Strict Blood Pressure Control and ACE Inhibition on CRF Progression in Pediatric Patients (ESCAPE)", and the "Cardiovascular Comorbidity in Children with Chronic Kidney Disease (4C)" study. In these cohorts, pediatric subjects with CKD have been prospectively followed with standardized measurements for renal progression. The current version of the upload includes the genotype and baseline phenotype for the CKiD cohort. In brief the CKiD study is a prospective study of children with chronic kidney disease (CKD) between the ages of 1 year to 16 years of age and an estimated glomerular filtration rate (eGFR) by Schwartz equation between 30 and 75 ml/min per 1.73msup2/sup. Included in this upload are the phenotypic data for anemia traits utilized for the sub-study, "Role of Genetic Variation in the Anemia of Chronic Kidney Disease" (K24DK078737), with the RBC trait and anemia data pertaining to CKiD as well.

Link

dbGaP study=phs000650

Palavras-chave

  1. 24/01/2023 24/01/2023 - Simon Heim
  2. 29/01/2025 29/01/2025 - Akane Nishihara
Titular dos direitos

Craig Wong, MD, MPH, University of New Mexico, Health Sciences Center and UNM Children's Hospital, Albuquerque, NM, USA

Transferido a

29 de janeiro de 2025

DOI

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Licença

Creative Commons BY 4.0

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dbGaP phs000650 Genetic Factors Linked with Renal Progression (PediGFR) - CKiD

The data inform about type of kidney disease diagnosed, blood/urine analysis values, measurements of height/weight, Tanner stage of subjects, and provide general socio-demographic data. There has been no change in data compared to study version 1, but the study has become a substudy of phs000842 , the PediGFR cohort study.

pht003486
Descrição

pht003486

Alias
UMLS CUI [1,1]
C3846158
Subject ID
Descrição

KID

Tipo de dados

string

Alias
UMLS CUI [1,1]
C2348585
Child's gender
Descrição

MALE1FE0

Tipo de dados

text

Alias
UMLS CUI [1,1]
C0079399
Primary diagnosis of Chronic Kidney Disease
Descrição

PRIMDX

Tipo de dados

text

Alias
UMLS CUI [1,1]
C0332137
UMLS CUI [1,2]
C1561643
Child's Primary Diagnosis (Grouped categories, diseases affecting the glomerulous vs. no)
Descrição

GNGDIAG

Tipo de dados

text

Alias
UMLS CUI [1,1]
C0008059
UMLS CUI [1,2]
C0332137
UMLS CUI [1,3]
C0683312
UMLS CUI [1,4]
C0268731
Average Height
Descrição

AVHEIGHT

Tipo de dados

float

Unidades de medida
  • cm
Alias
UMLS CUI [1,1]
C1510992
UMLS CUI [1,2]
C0005890
cm
Average Weight
Descrição

AVWEIGHT

Tipo de dados

text

Unidades de medida
  • kg
Alias
UMLS CUI [1,1]
C1510992
UMLS CUI [1,2]
C0005910
kg
Tanner Stage
Descrição

TANNER

Tipo de dados

text

Alias
UMLS CUI [1,1]
C2826146
IGFR (GFR4, GFR3 or GFR2)
Descrição

iGFR

Tipo de dados

float

Alias
UMLS CUI [1,1]
C1334088
Serum Creatinine
Descrição

SCr

Tipo de dados

float

Alias
UMLS CUI [1,1]
C0600061
Cystatin
Descrição

CYC_DB

Tipo de dados

float

Alias
UMLS CUI [1,1]
C0010646
BUN, collected from L05 (CBL)
Descrição

BUN

Tipo de dados

text

Alias
UMLS CUI [1,1]
C0005845
UMLS CUI [1,2]
C0812242
Urine Protein/Creatinine
Descrição

upcratio

Tipo de dados

float

Alias
UMLS CUI [1,1]
C1316828
Child's race
Descrição

RACE

Tipo de dados

text

Alias
UMLS CUI [1,1]
C0034510
UMLS CUI [1,2]
C0008059
Child of Hispanic/Latino
Descrição

HISP

Tipo de dados

text

Alias
UMLS CUI [1,1]
C0008059
UMLS CUI [1,2]
C0086409
UMLS CUI [1,3]
C0086528
Whether genotyping is performed on the subject?
Descrição

genotyped

Tipo de dados

text

Alias
UMLS CUI [1,1]
C1285573
UMLS CUI [1,2]
C0884358
Hemoglobin concentration
Descrição

Hemoglobin

Tipo de dados

float

Unidades de medida
  • g/dL
Alias
UMLS CUI [1,1]
C1318517
g/dL
Hematocrit
Descrição

Hematocrit

Tipo de dados

float

Unidades de medida
  • %
Alias
UMLS CUI [1,1]
C0518014
%
Mean corpuscular hemoglobin
Descrição

MCH

Tipo de dados

float

Unidades de medida
  • pg
Alias
UMLS CUI [1,1]
C0474535
pg
Mean corpuscular hemoglobin concentration
Descrição

MCHC

Tipo de dados

float

Unidades de medida
  • g/dL
Alias
UMLS CUI [1,1]
C0474535
g/dL
Mean corpuscular volume
Descrição

MCV

Tipo de dados

float

Unidades de medida
  • fL
Alias
UMLS CUI [1,1]
C1948043
fL
Red blood cell count
Descrição

RBCCount

Tipo de dados

float

Unidades de medida
  • MIL/L
Alias
UMLS CUI [1,1]
C0014772
MIL/L

Similar models

The data inform about type of kidney disease diagnosed, blood/urine analysis values, measurements of height/weight, Tanner stage of subjects, and provide general socio-demographic data. There has been no change in data compared to study version 1, but the study has become a substudy of phs000842 , the PediGFR cohort study.

Name
Tipo
Description | Question | Decode (Coded Value)
Tipo de dados
Alias
Item Group
pht003486
C3846158 (UMLS CUI [1,1])
KID
Item
Subject ID
string
C2348585 (UMLS CUI [1,1])
Item
Child's gender
text
C0079399 (UMLS CUI [1,1])
Code List
Child's gender
CL Item
Missing (-9)
CL Item
Female (0)
C0086287 (UMLS CUI [1,1])
CL Item
Male (1)
C0086582 (UMLS CUI [1,1])
PRIMDX
Item
Primary diagnosis of Chronic Kidney Disease
text
C0332137 (UMLS CUI [1,1])
C1561643 (UMLS CUI [1,2])
Item
Child's Primary Diagnosis (Grouped categories, diseases affecting the glomerulous vs. no)
text
C0008059 (UMLS CUI [1,1])
C0332137 (UMLS CUI [1,2])
C0683312 (UMLS CUI [1,3])
C0268731 (UMLS CUI [1,4])
Code List
Child's Primary Diagnosis (Grouped categories, diseases affecting the glomerulous vs. no)
CL Item
Glom (HUS) (1)
CL Item
Glom (NOT HUS) (2)
CL Item
Non-glom (GU, Cystic, Hereditary) (3)
CL Item
Non-glom (NOT GU, NOT Cystic, NOT Hereditary) (4)
AVHEIGHT
Item
Average Height
float
C1510992 (UMLS CUI [1,1])
C0005890 (UMLS CUI [1,2])
AVWEIGHT
Item
Average Weight
text
C1510992 (UMLS CUI [1,1])
C0005910 (UMLS CUI [1,2])
Item
Tanner Stage
text
C2826146 (UMLS CUI [1,1])
Code List
Tanner Stage
CL Item
Missing (-9)
CL Item
Stage 1 (1)
CL Item
Stage 2 (2)
CL Item
Stage 3 (3)
CL Item
Stage 4 (4)
CL Item
Stage 5 (5)
iGFR
Item
IGFR (GFR4, GFR3 or GFR2)
float
C1334088 (UMLS CUI [1,1])
SCr
Item
Serum Creatinine
float
C0600061 (UMLS CUI [1,1])
CYC_DB
Item
Cystatin
float
C0010646 (UMLS CUI [1,1])
BUN
Item
BUN, collected from L05 (CBL)
text
C0005845 (UMLS CUI [1,1])
C0812242 (UMLS CUI [1,2])
upcratio
Item
Urine Protein/Creatinine
float
C1316828 (UMLS CUI [1,1])
Item
Child's race
text
C0034510 (UMLS CUI [1,1])
C0008059 (UMLS CUI [1,2])
Code List
Child's race
CL Item
Missing (-9)
CL Item
Caucasian (1)
CL Item
African-American (2)
CL Item
American Indian (3)
CL Item
Native Hawaiian (4)
CL Item
Asian (5)
CL Item
Other (6)
CL Item
More than one race (excluding AA race) (7)
C0034510 (UMLS CUI [1,1])
CL Item
More than one race (including AA race) (8)
C0034510 (UMLS CUI [1,1])
Item
Child of Hispanic/Latino
text
C0008059 (UMLS CUI [1,1])
C0086409 (UMLS CUI [1,2])
C0086528 (UMLS CUI [1,3])
Code List
Child of Hispanic/Latino
CL Item
No (0)
CL Item
Yes (1)
CL Item
Missing (-9)
Item
Whether genotyping is performed on the subject?
text
C1285573 (UMLS CUI [1,1])
C0884358 (UMLS CUI [1,2])
Code List
Whether genotyping is performed on the subject?
CL Item
No (0)
CL Item
Yes (1)
Hemoglobin
Item
Hemoglobin concentration
float
C1318517 (UMLS CUI [1,1])
Hematocrit
Item
Hematocrit
float
C0518014 (UMLS CUI [1,1])
MCH
Item
Mean corpuscular hemoglobin
float
C0474535 (UMLS CUI [1,1])
MCHC
Item
Mean corpuscular hemoglobin concentration
float
C0474535 (UMLS CUI [1,1])
MCV
Item
Mean corpuscular volume
float
C1948043 (UMLS CUI [1,1])
RBCCount
Item
Red blood cell count
float
C0014772 (UMLS CUI [1,1])

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