ID

46164

Descrição

Principal Investigator: Eric VILAIN, MD, PhD, University of California, Los Angeles, CA, USA MeSH: Disorders of sex development,46, XY Disorders of Sex Development,Sex Chromosome Disorders of Sex Development,Ovotesticular Disorders of Sex Development,46, XX Testicular Disorders of Sex Development,Hypospadias,Cloaca,Gonadal Dysgenesis,Urogenital Abnormalities,Mullerian aplasia,Omphalocele exstrophy imperforate anus,Sexual Development https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs001178 The Gabriella Miller Kids First Pediatric Research Program (Kids First) is a trans-NIH effort initiated in response to the 2014 Gabriella Miller Kids First Research Act and supported by the NIH Common Fund. This program focuses on gene discovery in pediatric cancers and structural birth defects and the development of the Gabriella Miller Kids First Pediatric Data Resource (Kids First Data Resource). Both childhood cancers and structural birth defects are critical and costly conditions associated with substantial morbidity and mortality. Elucidating the underlying genetic etiology of these diseases has the potential to profoundly improve preventative measures, diagnostics, and therapeutic interventions. Whole Genome Sequence (WGS) and phenotypic data from this study are accessible through dbGaP and kidsfirstdrc.org, where other Kids First datasets can also be accessed. Disorders/Differences of Sex Development (DSD) are congenital conditions in which development of chromosomal, gonadal, or anatomic sex is atypical. DSD are chronic medical conditions collectively affecting ~1% of the population, frequently requiring life-long care by multiple specialists, and carrying a significant public health burden. Some are associated with life-threatening events, such as adrenal crises in Congenital Adrenal Hyperplasia (CAH). DSD are also associated with increased infertility, cancer, gender dysphoria risks, psychosocial distress and pervasive challenges to health-related quality of life (HRQoL) for patients and families. DSD are broadly classified into three categories: sex chromosome DSD, 46,XY DSD and 46,XX DSD, and further classified according to the type of gonad found in the patient (ovary, testis, ovotestis). We were able to increase significantly the diagnostic success for DSD using Whole Exome Sequencing (WES), with the identification of disease-causing and likely pathogenic variants in a third of a cohort of 46,XY patients. We have therefore proposed a shift in the diagnostic approach to DSD to use next-gen sequencing as a first-line clinical test, which could lead to faster and more accurate diagnosis, and orient further clinical management, limiting unnecessary, costly, and often invasive endocrine testing and imaging. However many remain unexplained (over half of the XY cases, a significant minority of XX cases, including most ovotesticular DSD, and most syndromic cases). In addition, the very large phenotypic variability in cases with known variants in the same gene is unexplained. We here propose to use Whole-Genome Sequencing (WGS), which dramatically improves upon exome sequencing, covering both coding and non-coding parts of the genome more uniformly, as an approach to not only improve diagnostic yield, but also to identify novel genes and regulatory elements involved in DSD.

Link

https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs001178

Palavras-chave

  1. 22/05/2023 22/05/2023 - Arman Ghanaat
  2. 29/01/2025 29/01/2025 - Akane Nishihara
Titular dos direitos

Eric VILAIN, MD, PhD, University of California, Los Angeles, CA, USA

Transferido a

29 de janeiro de 2025

DOI

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Licença

Creative Commons BY 4.0

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dbGaP phs001178 UCLA/Gabriella Miller Kids First Disorders of Sex Development Study

Subject ID, family ID, father, mother, and sex of participants with or without sex development disorders and involved in the "Disorders/Differences of Sex Development (DSD) Study Performed at UCLA in Collaboration with the DSD-Translational Research Network (DSD-TRN), with the Support of the Gabriella Miller Kids First Pediatric Research Program" project.

  1. StudyEvent: dbGaP phs001178 UCLA/Gabriella Miller Kids First Disorders of Sex Development Study
    1. Eligibility Criteria
    2. Subject ID, subject source, source subject ID, affection status, and consent group of participants with or without sex development disorders and involved in the "Disorders/Differences of Sex Development (DSD) Study Performed at UCLA in Collaboration with the DSD-Translational Research Network (DSD-TRN), with the Support of the Gabriella Miller Kids First Pediatric Research Program" project.
    3. Subject ID, family ID, father, mother, and sex of participants with or without sex development disorders and involved in the "Disorders/Differences of Sex Development (DSD) Study Performed at UCLA in Collaboration with the DSD-Translational Research Network (DSD-TRN), with the Support of the Gabriella Miller Kids First Pediatric Research Program" project.
    4. Subject ID, sample ID, sample source, source sample ID, and sample use variable of participants with or without sex development disorders and involved in the "Disorders/Differences of Sex Development (DSD) Study Performed at UCLA in Collaboration with the DSD-Translational Research Network (DSD-TRN), with the Support of the Gabriella Miller Kids First Pediatric Research Program" project.
    5. Sample ID, analyte type, body site where sample was obtained, tumor status of sample, and sequencing center of participants with or without sex development disorders and involved in the "Disorders/Differences of Sex Development (DSD) Study Performed at UCLA in Collaboration with the DSD-Translational Research Network (DSD-TRN), with the Support of the Gabriella Miller Kids First Pediatric Research Program" project.
pht008548
Descrição

pht008548

Alias
UMLS CUI [1,1]
C3846158
Family ID
Descrição

FAMILY_ID

Tipo de dados

string

Alias
UMLS CUI [1,1]
C3669174
Unique subject ID
Descrição

SUBJECT_ID

Tipo de dados

string

Alias
UMLS CUI [1,1]
C2348585
Mother subject ID
Descrição

MOTHER

Tipo de dados

string

Alias
UMLS CUI [1,1]
C3669352
UMLS CUI [1,2]
C0030761
Father subject ID
Descrição

FATHER

Tipo de dados

string

Alias
UMLS CUI [1,1]
C3669177
UMLS CUI [1,2]
C0030761
Legal sex of subject at time of sample collection
Descrição

phv00396645

Tipo de dados

integer

Alias
UMLS CUI [1,1]
C0079399

Similar models

Subject ID, family ID, father, mother, and sex of participants with or without sex development disorders and involved in the "Disorders/Differences of Sex Development (DSD) Study Performed at UCLA in Collaboration with the DSD-Translational Research Network (DSD-TRN), with the Support of the Gabriella Miller Kids First Pediatric Research Program" project.

  1. StudyEvent: dbGaP phs001178 UCLA/Gabriella Miller Kids First Disorders of Sex Development Study
    1. Eligibility Criteria
    2. Subject ID, subject source, source subject ID, affection status, and consent group of participants with or without sex development disorders and involved in the "Disorders/Differences of Sex Development (DSD) Study Performed at UCLA in Collaboration with the DSD-Translational Research Network (DSD-TRN), with the Support of the Gabriella Miller Kids First Pediatric Research Program" project.
    3. Subject ID, family ID, father, mother, and sex of participants with or without sex development disorders and involved in the "Disorders/Differences of Sex Development (DSD) Study Performed at UCLA in Collaboration with the DSD-Translational Research Network (DSD-TRN), with the Support of the Gabriella Miller Kids First Pediatric Research Program" project.
    4. Subject ID, sample ID, sample source, source sample ID, and sample use variable of participants with or without sex development disorders and involved in the "Disorders/Differences of Sex Development (DSD) Study Performed at UCLA in Collaboration with the DSD-Translational Research Network (DSD-TRN), with the Support of the Gabriella Miller Kids First Pediatric Research Program" project.
    5. Sample ID, analyte type, body site where sample was obtained, tumor status of sample, and sequencing center of participants with or without sex development disorders and involved in the "Disorders/Differences of Sex Development (DSD) Study Performed at UCLA in Collaboration with the DSD-Translational Research Network (DSD-TRN), with the Support of the Gabriella Miller Kids First Pediatric Research Program" project.
Name
Tipo
Description | Question | Decode (Coded Value)
Tipo de dados
Alias
Item Group
pht008548
C3846158 (UMLS CUI [1,1])
FAMILY_ID
Item
Family ID
string
C3669174 (UMLS CUI [1,1])
SUBJECT_ID
Item
Unique subject ID
string
C2348585 (UMLS CUI [1,1])
MOTHER
Item
Mother subject ID
string
C3669352 (UMLS CUI [1,1])
C0030761 (UMLS CUI [1,2])
FATHER
Item
Father subject ID
string
C3669177 (UMLS CUI [1,1])
C0030761 (UMLS CUI [1,2])
Item
Legal sex of subject at time of sample collection
integer
C0079399 (UMLS CUI [1,1])
Code List
Legal sex of subject at time of sample collection
CL Item
Male (1)
C0086582 (UMLS CUI [1,1])
CL Item
Female (2)
C0086287 (UMLS CUI [1,1])
CL Item
unknown (3)

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