ID

46164

Descrição

Principal Investigator: Eric VILAIN, MD, PhD, University of California, Los Angeles, CA, USA MeSH: Disorders of sex development,46, XY Disorders of Sex Development,Sex Chromosome Disorders of Sex Development,Ovotesticular Disorders of Sex Development,46, XX Testicular Disorders of Sex Development,Hypospadias,Cloaca,Gonadal Dysgenesis,Urogenital Abnormalities,Mullerian aplasia,Omphalocele exstrophy imperforate anus,Sexual Development https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs001178 The Gabriella Miller Kids First Pediatric Research Program (Kids First) is a trans-NIH effort initiated in response to the 2014 Gabriella Miller Kids First Research Act and supported by the NIH Common Fund. This program focuses on gene discovery in pediatric cancers and structural birth defects and the development of the Gabriella Miller Kids First Pediatric Data Resource (Kids First Data Resource). Both childhood cancers and structural birth defects are critical and costly conditions associated with substantial morbidity and mortality. Elucidating the underlying genetic etiology of these diseases has the potential to profoundly improve preventative measures, diagnostics, and therapeutic interventions. Whole Genome Sequence (WGS) and phenotypic data from this study are accessible through dbGaP and kidsfirstdrc.org, where other Kids First datasets can also be accessed. Disorders/Differences of Sex Development (DSD) are congenital conditions in which development of chromosomal, gonadal, or anatomic sex is atypical. DSD are chronic medical conditions collectively affecting ~1% of the population, frequently requiring life-long care by multiple specialists, and carrying a significant public health burden. Some are associated with life-threatening events, such as adrenal crises in Congenital Adrenal Hyperplasia (CAH). DSD are also associated with increased infertility, cancer, gender dysphoria risks, psychosocial distress and pervasive challenges to health-related quality of life (HRQoL) for patients and families. DSD are broadly classified into three categories: sex chromosome DSD, 46,XY DSD and 46,XX DSD, and further classified according to the type of gonad found in the patient (ovary, testis, ovotestis). We were able to increase significantly the diagnostic success for DSD using Whole Exome Sequencing (WES), with the identification of disease-causing and likely pathogenic variants in a third of a cohort of 46,XY patients. We have therefore proposed a shift in the diagnostic approach to DSD to use next-gen sequencing as a first-line clinical test, which could lead to faster and more accurate diagnosis, and orient further clinical management, limiting unnecessary, costly, and often invasive endocrine testing and imaging. However many remain unexplained (over half of the XY cases, a significant minority of XX cases, including most ovotesticular DSD, and most syndromic cases). In addition, the very large phenotypic variability in cases with known variants in the same gene is unexplained. We here propose to use Whole-Genome Sequencing (WGS), which dramatically improves upon exome sequencing, covering both coding and non-coding parts of the genome more uniformly, as an approach to not only improve diagnostic yield, but also to identify novel genes and regulatory elements involved in DSD.

Link

https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs001178

Palavras-chave

  1. 22-05-23 22-05-23 - Arman Ghanaat
  2. 29-01-25 29-01-25 - Akane Nishihara
Titular dos direitos

Eric VILAIN, MD, PhD, University of California, Los Angeles, CA, USA

Transferido a

29 januari 2025

DOI

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Licença

Creative Commons BY 4.0

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dbGaP phs001178 UCLA/Gabriella Miller Kids First Disorders of Sex Development Study

Eligibility Criteria

  1. StudyEvent: dbGaP phs001178 UCLA/Gabriella Miller Kids First Disorders of Sex Development Study
    1. Eligibility Criteria
    2. Subject ID, subject source, source subject ID, affection status, and consent group of participants with or without sex development disorders and involved in the "Disorders/Differences of Sex Development (DSD) Study Performed at UCLA in Collaboration with the DSD-Translational Research Network (DSD-TRN), with the Support of the Gabriella Miller Kids First Pediatric Research Program" project.
    3. Subject ID, family ID, father, mother, and sex of participants with or without sex development disorders and involved in the "Disorders/Differences of Sex Development (DSD) Study Performed at UCLA in Collaboration with the DSD-Translational Research Network (DSD-TRN), with the Support of the Gabriella Miller Kids First Pediatric Research Program" project.
    4. Subject ID, sample ID, sample source, source sample ID, and sample use variable of participants with or without sex development disorders and involved in the "Disorders/Differences of Sex Development (DSD) Study Performed at UCLA in Collaboration with the DSD-Translational Research Network (DSD-TRN), with the Support of the Gabriella Miller Kids First Pediatric Research Program" project.
    5. Sample ID, analyte type, body site where sample was obtained, tumor status of sample, and sequencing center of participants with or without sex development disorders and involved in the "Disorders/Differences of Sex Development (DSD) Study Performed at UCLA in Collaboration with the DSD-Translational Research Network (DSD-TRN), with the Support of the Gabriella Miller Kids First Pediatric Research Program" project.
Inclusion and exclusion criteria
Descrição

Inclusion and exclusion criteria

Alias
UMLS CUI [1,1]
C1512693
UMLS CUI [1,2]
C0680251
Included in the study are trios or larger families with a diagnosed DSD for whom no genetic etiology has been uncovered by the clinical teams. Exceptionally, singletons were included when parents were not available (e.g. adoption) AND previous genetic testing had identified a single candidate variant in a gene known to cause DSD in a recessive fashion, looking for a second structural or non-exonic allele. Patients of all ethnicities, races, sexes, genders were eligible to be included. Only patients for whom standardized phenotypic information was available were included.
Descrição

Elig.phs001178.v1.p1.1

Tipo de dados

boolean

Alias
UMLS CUI [1,1]
C1512693
UMLS CUI [1,2]
C0036875
UMLS CUI [1,3]
C1314792
UMLS CUI [1,4]
C0205160
UMLS CUI [1,5]
C0314603
UMLS CUI [1,6]
C0015576
UMLS CUI [1,7]
C0439091
UMLS CUI [1,8]
C0205449
UMLS CUI [1,9]
C1515981
UMLS CUI [1,10]
C0205375
UMLS CUI [1,11]
C1955348
UMLS CUI [1,12]
C0031437
UMLS CUI [2,1]
C1512693
UMLS CUI [2,2]
C1313913
UMLS CUI [2,3]
C3844674
UMLS CUI [2,4]
C1515981
UMLS CUI [2,5]
C1314792
UMLS CUI [2,6]
C0205447
UMLS CUI [2,7]
C0017361
UMLS CUI [2,8]
C0036875
UMLS CUI [2,9]
C0205375
UMLS CUI [2,10]
C1955348
UMLS CUI [2,11]
C0031437
Population studied includes patients with 46,XX DSD and 46,XY DSD, regardless of endocrine and/or developmental phenotype:
Descrição

Elig.phs001178.v1.p1.2

Tipo de dados

boolean

Alias
UMLS CUI [1,1]
C1512693
UMLS CUI [1,2]
C0036875
UMLS CUI [1,3]
C0450371
UMLS CUI [1,4]
C1518602
UMLS CUI [1,5]
C1710693
46,XY disorders of testicular development: complete gonadal dysgenesis (Swyer syndrome), partial gonadal dysgenesis, testicular regression, ovotesticular DSD
Descrição

Elig.phs001178.v1.p1.3

Tipo de dados

boolean

Alias
UMLS CUI [1,1]
C1512693
UMLS CUI [1,2]
C2936694
UMLS CUI [2,1]
C1512693
UMLS CUI [2,2]
C4510744
UMLS CUI [3,1]
C1512693
UMLS CUI [3,2]
C0266427
UMLS CUI [4,1]
C1512693
UMLS CUI [4,2]
C1710693
UMLS CUI [4,3]
C1515981
UMLS CUI [4,4]
C2748895
suspected 46,XY disorders of androgen & other hormone biosynthesis or action (e.g. androgen resistance)
Descrição

Elig.phs001178.v1.p1.4

Tipo de dados

boolean

Alias
UMLS CUI [1,1]
C1512693
UMLS CUI [1,2]
C0277540
UMLS CUI [1,3]
C5679870
UMLS CUI [1,4]
C1515981
UMLS CUI [1,5]
C0277540
UMLS CUI [1,6]
C0596715
UMLS CUI [2,1]
C1512693
UMLS CUI [2,2]
C0277540
UMLS CUI [2,3]
C3900198
UMLS CUI [2,4]
C1515981
UMLS CUI [2,5]
C0277540
UMLS CUI [2,6]
C1278757
46,XX disorders of ovarian development, including gonadal dysgenesis and ovotesticular DSD
Descrição

Elig.phs001178.v1.p1.5

Tipo de dados

boolean

Alias
UMLS CUI [1,1]
C1512693
UMLS CUI [1,2]
C0450371
UMLS CUI [1,3]
C0029928
UMLS CUI [1,4]
C0678723
suspected 46,XX excess of androgen exposure (of fetal, placental, maternal, or environmental origin)
Descrição

Elig.phs001178.v1.p1.6

Tipo de dados

boolean

Alias
UMLS CUI [1,1]
C1512693
UMLS CUI [1,2]
C0277540
UMLS CUI [1,3]
C5679876
UMLS CUI [2,1]
C1512693
UMLS CUI [2,2]
C0277540
UMLS CUI [2,3]
C0235461
UMLS CUI [2,4]
C3494751
other syndromes of unknown etiology: cloacal exstrophy, vaginal atresia, and other syndromic DSD (XX and XY).
Descrição

Elig.phs001178.v1.p1.7

Tipo de dados

boolean

Alias
UMLS CUI [1,1]
C1512693
UMLS CUI [1,2]
C0345217
UMLS CUI [2,1]
C1512693
UMLS CUI [2,2]
C1321884
UMLS CUI [3,1]
C1512693
UMLS CUI [3,2]
C0205394
UMLS CUI [3,3]
C5679873
UMLS CUI [4,1]
C1512693
UMLS CUI [4,2]
C0205394
UMLS CUI [4,3]
C5680224

Similar models

Eligibility Criteria

  1. StudyEvent: dbGaP phs001178 UCLA/Gabriella Miller Kids First Disorders of Sex Development Study
    1. Eligibility Criteria
    2. Subject ID, subject source, source subject ID, affection status, and consent group of participants with or without sex development disorders and involved in the "Disorders/Differences of Sex Development (DSD) Study Performed at UCLA in Collaboration with the DSD-Translational Research Network (DSD-TRN), with the Support of the Gabriella Miller Kids First Pediatric Research Program" project.
    3. Subject ID, family ID, father, mother, and sex of participants with or without sex development disorders and involved in the "Disorders/Differences of Sex Development (DSD) Study Performed at UCLA in Collaboration with the DSD-Translational Research Network (DSD-TRN), with the Support of the Gabriella Miller Kids First Pediatric Research Program" project.
    4. Subject ID, sample ID, sample source, source sample ID, and sample use variable of participants with or without sex development disorders and involved in the "Disorders/Differences of Sex Development (DSD) Study Performed at UCLA in Collaboration with the DSD-Translational Research Network (DSD-TRN), with the Support of the Gabriella Miller Kids First Pediatric Research Program" project.
    5. Sample ID, analyte type, body site where sample was obtained, tumor status of sample, and sequencing center of participants with or without sex development disorders and involved in the "Disorders/Differences of Sex Development (DSD) Study Performed at UCLA in Collaboration with the DSD-Translational Research Network (DSD-TRN), with the Support of the Gabriella Miller Kids First Pediatric Research Program" project.
Name
Tipo
Description | Question | Decode (Coded Value)
Tipo de dados
Alias
Item Group
Inclusion and exclusion criteria
C1512693 (UMLS CUI [1,1])
C0680251 (UMLS CUI [1,2])
Elig.phs001178.v1.p1.1
Item
Included in the study are trios or larger families with a diagnosed DSD for whom no genetic etiology has been uncovered by the clinical teams. Exceptionally, singletons were included when parents were not available (e.g. adoption) AND previous genetic testing had identified a single candidate variant in a gene known to cause DSD in a recessive fashion, looking for a second structural or non-exonic allele. Patients of all ethnicities, races, sexes, genders were eligible to be included. Only patients for whom standardized phenotypic information was available were included.
boolean
C1512693 (UMLS CUI [1,1])
C0036875 (UMLS CUI [1,2])
C1314792 (UMLS CUI [1,3])
C0205160 (UMLS CUI [1,4])
C0314603 (UMLS CUI [1,5])
C0015576 (UMLS CUI [1,6])
C0439091 (UMLS CUI [1,7])
C0205449 (UMLS CUI [1,8])
C1515981 (UMLS CUI [1,9])
C0205375 (UMLS CUI [1,10])
C1955348 (UMLS CUI [1,11])
C0031437 (UMLS CUI [1,12])
C1512693 (UMLS CUI [2,1])
C1313913 (UMLS CUI [2,2])
C3844674 (UMLS CUI [2,3])
C1515981 (UMLS CUI [2,4])
C1314792 (UMLS CUI [2,5])
C0205447 (UMLS CUI [2,6])
C0017361 (UMLS CUI [2,7])
C0036875 (UMLS CUI [2,8])
C0205375 (UMLS CUI [2,9])
C1955348 (UMLS CUI [2,10])
C0031437 (UMLS CUI [2,11])
Elig.phs001178.v1.p1.2
Item
Population studied includes patients with 46,XX DSD and 46,XY DSD, regardless of endocrine and/or developmental phenotype:
boolean
C1512693 (UMLS CUI [1,1])
C0036875 (UMLS CUI [1,2])
C0450371 (UMLS CUI [1,3])
C1518602 (UMLS CUI [1,4])
C1710693 (UMLS CUI [1,5])
Elig.phs001178.v1.p1.3
Item
46,XY disorders of testicular development: complete gonadal dysgenesis (Swyer syndrome), partial gonadal dysgenesis, testicular regression, ovotesticular DSD
boolean
C1512693 (UMLS CUI [1,1])
C2936694 (UMLS CUI [1,2])
C1512693 (UMLS CUI [2,1])
C4510744 (UMLS CUI [2,2])
C1512693 (UMLS CUI [3,1])
C0266427 (UMLS CUI [3,2])
C1512693 (UMLS CUI [4,1])
C1710693 (UMLS CUI [4,2])
C1515981 (UMLS CUI [4,3])
C2748895 (UMLS CUI [4,4])
Elig.phs001178.v1.p1.4
Item
suspected 46,XY disorders of androgen & other hormone biosynthesis or action (e.g. androgen resistance)
boolean
C1512693 (UMLS CUI [1,1])
C0277540 (UMLS CUI [1,2])
C5679870 (UMLS CUI [1,3])
C1515981 (UMLS CUI [1,4])
C0277540 (UMLS CUI [1,5])
C0596715 (UMLS CUI [1,6])
C1512693 (UMLS CUI [2,1])
C0277540 (UMLS CUI [2,2])
C3900198 (UMLS CUI [2,3])
C1515981 (UMLS CUI [2,4])
C0277540 (UMLS CUI [2,5])
C1278757 (UMLS CUI [2,6])
Elig.phs001178.v1.p1.5
Item
46,XX disorders of ovarian development, including gonadal dysgenesis and ovotesticular DSD
boolean
C1512693 (UMLS CUI [1,1])
C0450371 (UMLS CUI [1,2])
C0029928 (UMLS CUI [1,3])
C0678723 (UMLS CUI [1,4])
Elig.phs001178.v1.p1.6
Item
suspected 46,XX excess of androgen exposure (of fetal, placental, maternal, or environmental origin)
boolean
C1512693 (UMLS CUI [1,1])
C0277540 (UMLS CUI [1,2])
C5679876 (UMLS CUI [1,3])
C1512693 (UMLS CUI [2,1])
C0277540 (UMLS CUI [2,2])
C0235461 (UMLS CUI [2,3])
C3494751 (UMLS CUI [2,4])
Elig.phs001178.v1.p1.7
Item
other syndromes of unknown etiology: cloacal exstrophy, vaginal atresia, and other syndromic DSD (XX and XY).
boolean
C1512693 (UMLS CUI [1,1])
C0345217 (UMLS CUI [1,2])
C1512693 (UMLS CUI [2,1])
C1321884 (UMLS CUI [2,2])
C1512693 (UMLS CUI [3,1])
C0205394 (UMLS CUI [3,2])
C5679873 (UMLS CUI [3,3])
C1512693 (UMLS CUI [4,1])
C0205394 (UMLS CUI [4,2])
C5680224 (UMLS CUI [4,3])

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