ID

46143

Descrizione

Principal Investigator: Chris Haiman, ScD, University of Southern California, CA, USA MeSH: Breast Neoplasms https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs000851 The GWAS includes African American participants from 9 epidemiological studies of breast cancer, comprising a total of 3,153 cases and 2,831 controls (cases/controls: The Multiethnic Cohort Study (MEC), 734/1,003; The Los Angeles component of The Women's Contraceptive and Reproductive Experiences (CARE) Study, 380/224; The Women's Circle of Health Study (WCHS), 272/240; The San Francisco Bay Area Breast Cancer Study (SFBCS), 172/231; The Northern California Breast Cancer Family Registry (NC-BCFR), 440/53;The Carolina Breast Cancer Study (CBCS), 656/608; The Prostate, Lung, Colorectal, and Ovarian Cancer Screening Trial (PLCO) Cohort, 64/133; The Nashville Breast Health Study (NBHS), 310/186; and, The Wake Forest University Breast Cancer Study (WFBC), 125/153). Quality control of the GWAS data and additional details can be found in Chen et al. Hum Genet. 2013 (PMID: 22923054)

collegamento

dbGaP study=phs000851

Keywords

  1. 10-03-24 10-03-24 - Madita Rudolph
  2. 29-01-25 29-01-25 - Akane Nishihara
  3. 29-01-25 29-01-25 - Akane Nishihara
Titolare del copyright

Chris Haiman, ScD, University of Southern California, CA, USA

Caricato su

29 januari 2025

DOI

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Licenza

Creative Commons BY 4.0

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dbGaP phs000851 African American Breast Cancer GWAS

Subject ID, sample ID, sample source, source sample ID, and sample use variable obtained from participants with or without breast cancer and involved in the "African American Breast Cancer GWAS" project.

pht004683
Descrizione

pht004683

Alias
UMLS CUI [1,1]
C3846158 (Other Coding)
LOINC
LA4728-7
Study subject identifier
Descrizione

SUBJECT_ID

Tipo di dati

text

Alias
UMLS CUI [1,1]
C2348585 (Clinical Trial Subject Unique Identifier)
Sample identifier
Descrizione

SAMPLE_ID

Tipo di dati

text

Alias
UMLS CUI [1,1]
C1299222 (Sample identification number)
SNOMED
372274003
Sample source
Descrizione

SAMPLE_SOURCE

Tipo di dati

text

Alias
UMLS CUI [1,1]
C2347026 (Biospecimen)
UMLS CUI [1,2]
C0449416 (Source)
SNOMED
260753009
LOINC
LP21212-3
Subject identifier in dbGaP
Descrizione

SOURCE_SAMPLE_ID

Tipo di dati

text

Alias
UMLS CUI [1,1]
C2348585 (Clinical Trial Subject Unique Identifier)
Sample Use
Descrizione

SAMPLE_USE

Tipo di dati

text

Alias
UMLS CUI [1,1]
C2347026 (Biospecimen)
UMLS CUI [1,2]
C1524063 (Use of)
SNOMED
260676000

Similar models

Subject ID, sample ID, sample source, source sample ID, and sample use variable obtained from participants with or without breast cancer and involved in the "African American Breast Cancer GWAS" project.

Name
genere
Description | Question | Decode (Coded Value)
Tipo di dati
Alias
Item Group
pht004683
C3846158 (UMLS CUI [1,1])
SUBJECT_ID
Item
Study subject identifier
text
C2348585 (UMLS CUI [1,1])
SAMPLE_ID
Item
Sample identifier
text
C1299222 (UMLS CUI [1,1])
Item
Sample source
text
C2347026 (UMLS CUI [1,1])
C0449416 (UMLS CUI [1,2])
Code List
Sample source
CL Item
dbGaP (dbGaP)
SOURCE_SAMPLE_ID
Item
Subject identifier in dbGaP
text
C2348585 (UMLS CUI [1,1])
Item
Sample Use
text
C2347026 (UMLS CUI [1,1])
C1524063 (UMLS CUI [1,2])
Code List
Sample Use
CL Item
SNP genotypes obtained using standard or custom microarrays (Array_SNP)
C2347026 (UMLS CUI [1,1])
C0042153 (UMLS CUI [1,2])
C0752046 (UMLS CUI [1,3])
C1449575 (UMLS CUI [1,4])

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