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ID

46143

Beschrijving

Principal Investigator: Chris Haiman, ScD, University of Southern California, CA, USA MeSH: Breast Neoplasms https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs000851 The GWAS includes African American participants from 9 epidemiological studies of breast cancer, comprising a total of 3,153 cases and 2,831 controls (cases/controls: The Multiethnic Cohort Study (MEC), 734/1,003; The Los Angeles component of The Women's Contraceptive and Reproductive Experiences (CARE) Study, 380/224; The Women's Circle of Health Study (WCHS), 272/240; The San Francisco Bay Area Breast Cancer Study (SFBCS), 172/231; The Northern California Breast Cancer Family Registry (NC-BCFR), 440/53;The Carolina Breast Cancer Study (CBCS), 656/608; The Prostate, Lung, Colorectal, and Ovarian Cancer Screening Trial (PLCO) Cohort, 64/133; The Nashville Breast Health Study (NBHS), 310/186; and, The Wake Forest University Breast Cancer Study (WFBC), 125/153). Quality control of the GWAS data and additional details can be found in Chen et al. Hum Genet. 2013 (PMID: 22923054)

Link

dbGaP study=phs000851

Trefwoorden

  1. 10-03-24 10-03-24 - Madita Rudolph
  2. 29-01-25 29-01-25 - Akane Nishihara
  3. 29-01-25 29-01-25 - Akane Nishihara
Houder van rechten

Chris Haiman, ScD, University of Southern California, CA, USA

Geüploaded op

29 januari 2025

DOI

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Licentie

Creative Commons BY 4.0

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    dbGaP phs000851 African American Breast Cancer GWAS

    Subject ID, sample ID, sample source, source sample ID, and sample use variable obtained from participants with or without breast cancer and involved in the "African American Breast Cancer GWAS" project.

    pht004683
    Beschrijving

    pht004683

    Alias
    UMLS CUI [1,1]
    C3846158 (Other Coding)
    LOINC
    LA4728-7
    Study subject identifier
    Beschrijving

    SUBJECT_ID

    Datatype

    text

    Alias
    UMLS CUI [1,1]
    C2348585 (Clinical Trial Subject Unique Identifier)
    Sample identifier
    Beschrijving

    SAMPLE_ID

    Datatype

    text

    Alias
    UMLS CUI [1,1]
    C1299222 (Sample identification number)
    SNOMED
    372274003
    Sample source
    Beschrijving

    SAMPLE_SOURCE

    Datatype

    text

    Alias
    UMLS CUI [1,1]
    C2347026 (Biospecimen)
    UMLS CUI [1,2]
    C0449416 (Source)
    SNOMED
    260753009
    LOINC
    LP21212-3
    Subject identifier in dbGaP
    Beschrijving

    SOURCE_SAMPLE_ID

    Datatype

    text

    Alias
    UMLS CUI [1,1]
    C2348585 (Clinical Trial Subject Unique Identifier)
    Sample Use
    Beschrijving

    SAMPLE_USE

    Datatype

    text

    Alias
    UMLS CUI [1,1]
    C2347026 (Biospecimen)
    UMLS CUI [1,2]
    C1524063 (Use of)
    SNOMED
    260676000

    Similar models

    Subject ID, sample ID, sample source, source sample ID, and sample use variable obtained from participants with or without breast cancer and involved in the "African American Breast Cancer GWAS" project.

    Name
    Type
    Description | Question | Decode (Coded Value)
    Datatype
    Alias
    Item Group
    pht004683
    C3846158 (UMLS CUI [1,1])
    SUBJECT_ID
    Item
    Study subject identifier
    text
    C2348585 (UMLS CUI [1,1])
    SAMPLE_ID
    Item
    Sample identifier
    text
    C1299222 (UMLS CUI [1,1])
    Item
    Sample source
    text
    C2347026 (UMLS CUI [1,1])
    C0449416 (UMLS CUI [1,2])
    Code List
    Sample source
    CL Item
    dbGaP (dbGaP)
    SOURCE_SAMPLE_ID
    Item
    Subject identifier in dbGaP
    text
    C2348585 (UMLS CUI [1,1])
    Item
    Sample Use
    text
    C2347026 (UMLS CUI [1,1])
    C1524063 (UMLS CUI [1,2])
    Code List
    Sample Use
    CL Item
    SNP genotypes obtained using standard or custom microarrays (Array_SNP)
    C2347026 (UMLS CUI [1,1])
    C0042153 (UMLS CUI [1,2])
    C0752046 (UMLS CUI [1,3])
    C1449575 (UMLS CUI [1,4])

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