ID

46143

Description

Principal Investigator: Chris Haiman, ScD, University of Southern California, CA, USA MeSH: Breast Neoplasms https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs000851 The GWAS includes African American participants from 9 epidemiological studies of breast cancer, comprising a total of 3,153 cases and 2,831 controls (cases/controls: The Multiethnic Cohort Study (MEC), 734/1,003; The Los Angeles component of The Women's Contraceptive and Reproductive Experiences (CARE) Study, 380/224; The Women's Circle of Health Study (WCHS), 272/240; The San Francisco Bay Area Breast Cancer Study (SFBCS), 172/231; The Northern California Breast Cancer Family Registry (NC-BCFR), 440/53;The Carolina Breast Cancer Study (CBCS), 656/608; The Prostate, Lung, Colorectal, and Ovarian Cancer Screening Trial (PLCO) Cohort, 64/133; The Nashville Breast Health Study (NBHS), 310/186; and, The Wake Forest University Breast Cancer Study (WFBC), 125/153). Quality control of the GWAS data and additional details can be found in Chen et al. Hum Genet. 2013 (PMID: 22923054)

Link

dbGaP study=phs000851

Keywords

  1. 3/10/24 3/10/24 - Madita Rudolph
  2. 1/29/25 1/29/25 - Akane Nishihara
  3. 1/29/25 1/29/25 - Akane Nishihara
Copyright Holder

Chris Haiman, ScD, University of Southern California, CA, USA

Uploaded on

January 29, 2025

DOI

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License

Creative Commons BY 4.0

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dbGaP phs000851 African American Breast Cancer GWAS

Subject ID, sample ID, sample source, source sample ID, and sample use variable obtained from participants with or without breast cancer and involved in the "African American Breast Cancer GWAS" project.

pht004683
Description

pht004683

Alias
UMLS CUI [1,1]
C3846158
Study subject identifier
Description

SUBJECT_ID

Data type

text

Alias
UMLS CUI [1,1]
C2348585
Sample identifier
Description

SAMPLE_ID

Data type

text

Alias
UMLS CUI [1,1]
C1299222
Sample source
Description

SAMPLE_SOURCE

Data type

text

Alias
UMLS CUI [1,1]
C2347026
UMLS CUI [1,2]
C0449416
Subject identifier in dbGaP
Description

SOURCE_SAMPLE_ID

Data type

text

Alias
UMLS CUI [1,1]
C2348585
Sample Use
Description

SAMPLE_USE

Data type

text

Alias
UMLS CUI [1,1]
C2347026
UMLS CUI [1,2]
C1524063

Similar models

Subject ID, sample ID, sample source, source sample ID, and sample use variable obtained from participants with or without breast cancer and involved in the "African American Breast Cancer GWAS" project.

Name
Type
Description | Question | Decode (Coded Value)
Data type
Alias
Item Group
pht004683
C3846158 (UMLS CUI [1,1])
SUBJECT_ID
Item
Study subject identifier
text
C2348585 (UMLS CUI [1,1])
SAMPLE_ID
Item
Sample identifier
text
C1299222 (UMLS CUI [1,1])
Item
Sample source
text
C2347026 (UMLS CUI [1,1])
C0449416 (UMLS CUI [1,2])
Code List
Sample source
CL Item
dbGaP (dbGaP)
SOURCE_SAMPLE_ID
Item
Subject identifier in dbGaP
text
C2348585 (UMLS CUI [1,1])
Item
Sample Use
text
C2347026 (UMLS CUI [1,1])
C1524063 (UMLS CUI [1,2])
Code List
Sample Use
CL Item
SNP genotypes obtained using standard or custom microarrays (Array_SNP)
C2347026 (UMLS CUI [1,1])
C0042153 (UMLS CUI [1,2])
C0752046 (UMLS CUI [1,3])
C1449575 (UMLS CUI [1,4])

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