ID

45992

Descrizione

Principal Investigator: Elad Ziv, MD, University of California, San Francisco, USA MeSH: Breast Neoplasms,Receptors, Estrogen,Receptors, Progesterone https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs000912 The genome-wide association study (GWAS) includes participants enrolled into two different studies. The first study, the San Francisco Bay Area Cancer Study (SFBCS) is a population-based case-control study of breast cancer conducted in the San Francisco Bay Area and included women ages 35-79 years from three racial/ethnic groups: Non-Hispanic whites, African Americans, and Hispanics/Latinas. For the GWAS, only Hispanic/Latina women were included. Women diagnosed with invasive breast cancer between 1995 and 2002 were identified through the Greater Bay Area Cancer Registry. Controls were identified by random digit dialing and were frequency-matched to cases by age in 5 year increments and by race/ethnicity. Hispanic/Latina ethnicity was assessed by self-report. 175 Hispanic/Latina cases and 307 Hispanic/Latina controls from the SFBCS had given adequate consent and provided biospecimens that were used in the GWAS to be included in this data submission. The second study is the Northern California site of the Breast Cancer Family Registry (NC-BCFR). This population-based family study recruited breast cancer cases ages 18-64 years diagnosed from 1995-2009 that were identified through the Greater Bay Area Cancer Registry. Cases included all women at increased genetic susceptibility for breast cancer who met one or more of the following criteria: (a) being diagnosed with breast cancer at age 35 years; b) having a personal history of ovarian cancer or childhood cancer; (c) being diagnosed with two different breast cancers (bilateral breast cancers), with the first one diagnosed at age 50 years; and d) having one or more first-degree relatives with breast cancer, ovarian cancer or childhood cancer. Cases not meeting these criteria were randomly sampled and racial/ethnic minorities were oversampled. Controls were recruited by random digit dialing and were matched by 5-year age increments and by race/ethnicity. For the current GWAS only Latina/Hispanic cases and controls were included. Latina/Hispanic ethnicity was assessed by self-report. 631 Hispanic/Latina cases and 61 Hispanic/Latina controls from the NC-BCFR had given adequate consent and provided biospecimens that were used in the GWAS to be included in this data submission.

collegamento

dbGaP study=phs000912

Keywords

  1. 11/04/24 11/04/24 - Madita Rudolph
Titolare del copyright

Elad Ziv, MD, University of California, San Francisco, USA

Caricato su

11 aprile 2024

DOI

Per favore, per richiedere un accesso.

Licenza

Creative Commons BY 4.0

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dbGaP phs000912 San Francisco Bay Area Latina Breast Cancer Study

Subject ID, case or control status, bilateral breast cancer, age at diagnosis, gender, histological type and grade at diagnosis, status of estrogen and progesterone receptor of breast tumor of participants with or without breast cancer and involved in the "San Francisco Bay Area Latina Breast Cancer Study" project.

pht004732
Descrizione

pht004732

Alias
UMLS CUI [1,1]
C3846158
De-identified subject ID
Descrizione

SUBJECT_ID

Tipo di dati

string

Alias
UMLS CUI [1,1]
C4684638
UMLS CUI [1,2]
C2348585
Case-control status
Descrizione

case_status

Tipo di dati

text

Alias
UMLS CUI [1,1]
C3274646
Bilateral breast cancer
Descrizione

bilat

Tipo di dati

text

Alias
UMLS CUI [1,1]
C0281267
Age at diagnosis for cases, age at ascertainment for controls
Descrizione

agedx

Tipo di dati

text

Unità di misura
  • Years
Alias
UMLS CUI [1,1]
C1706256
UMLS CUI [1,2]
C1828181
UMLS CUI [2,1]
C0009932
UMLS CUI [2,2]
C0001779
UMLS CUI [2,3]
C0011008
UMLS CUI [2,4]
C0021822
Years
Gender of participant
Descrizione

sex

Tipo di dati

text

Alias
UMLS CUI [1,1]
C0079399
Stage at diagnosis
Descrizione

sumstage

Tipo di dati

text

Alias
UMLS CUI [1,1]
C1300072
UMLS CUI [1,2]
C4071762
Histological grade at diagnosis
Descrizione

histgrad

Tipo di dati

text

Alias
UMLS CUI [1,1]
C0919553
UMLS CUI [1,2]
C4071762
Histological type
Descrizione

histtype

Tipo di dati

text

Alias
UMLS CUI [1,1]
C0449574
Estrogen receptor status
Descrizione

er

Tipo di dati

text

Alias
UMLS CUI [1,1]
C2919271
Progesterone receptor status
Descrizione

pr

Tipo di dati

text

Alias
UMLS CUI [1,1]
C2919590

Similar models

Subject ID, case or control status, bilateral breast cancer, age at diagnosis, gender, histological type and grade at diagnosis, status of estrogen and progesterone receptor of breast tumor of participants with or without breast cancer and involved in the "San Francisco Bay Area Latina Breast Cancer Study" project.

Name
genere
Description | Question | Decode (Coded Value)
Tipo di dati
Alias
Item Group
pht004732
C3846158 (UMLS CUI [1,1])
SUBJECT_ID
Item
De-identified subject ID
string
C4684638 (UMLS CUI [1,1])
C2348585 (UMLS CUI [1,2])
Item
Case-control status
text
C3274646 (UMLS CUI [1,1])
Code List
Case-control status
CL Item
Case (1)
C3274647 (UMLS CUI [1,1])
CL Item
Control (2)
C3274648 (UMLS CUI [1,1])
bilat
Item
Bilateral breast cancer
text
C0281267 (UMLS CUI [1,1])
agedx
Item
Age at diagnosis for cases, age at ascertainment for controls
text
C1706256 (UMLS CUI [1,1])
C1828181 (UMLS CUI [1,2])
C0009932 (UMLS CUI [2,1])
C0001779 (UMLS CUI [2,2])
C0011008 (UMLS CUI [2,3])
C0021822 (UMLS CUI [2,4])
Item
Gender of participant
text
C0079399 (UMLS CUI [1,1])
Code List
Gender of participant
CL Item
Female (1)
C0086287 (UMLS CUI [1,1])
CL Item
Male (2)
C0086582 (UMLS CUI [1,1])
Item
Stage at diagnosis
text
C1300072 (UMLS CUI [1,1])
C4071762 (UMLS CUI [1,2])
Code List
Stage at diagnosis
CL Item
In situ (0)
CL Item
Localized (1)
CL Item
Regional extension only (2)
CL Item
Regional nodes only (3)
CL Item
Regional extension and nodes (4)
CL Item
Regional NOS (5)
CL Item
Remote (7)
CL Item
Unspecified (8)
CL Item
Unspecified (9)
Item
Histological grade at diagnosis
text
C0919553 (UMLS CUI [1,1])
C4071762 (UMLS CUI [1,2])
Code List
Histological grade at diagnosis
CL Item
Grade I (1)
CL Item
Grade II (2)
CL Item
Grade III (3)
CL Item
Grade IV (4)
CL Item
Not Stated (9)
Item
Histological type
text
C0449574 (UMLS CUI [1,1])
Code List
Histological type
CL Item
Not stated (9)
CL Item
Neoplasm malignant (8000)
CL Item
Carcinoma in situ, NOS (8010)
CL Item
Papillary carcinoma in situ (8050)
CL Item
Adenocarcinoma in situ (8140)
CL Item
Adenocarcinoma NOS (8141)
CL Item
Adenoid cystic carcinoma (8200)
CL Item
Cribriform carcinoma in situ (8201)
CL Item
Tubular adenocarcinoma (8211)
CL Item
Neuroendocrine carcinoma, NOS (8246)
CL Item
Mucinous adenocarcinoma (8480)
CL Item
Intraductal carcinoma noninfiltrating NOS, Infiltrating duct carcinoma NOS (8500)
CL Item
Comedocarcinoma non-infiltrating, Comedocarcinoma NOS (8501)
CL Item
Intraductal papillary adenocarcinoma with invasion (8503)
CL Item
Medullary carcinoma NOS (8510)
CL Item
Atypical medullary carcinoma (8513)
CL Item
Lobular carcinoma in situ, Lobular carcinoma NOS (8520)
CL Item
Infiltrating ductular carcinoma (8521)
CL Item
Intraductal and lobular in situ carcinoma, Infiltrating duct and lobular carcinoma (8522)
CL Item
Infiltrating duct mixed with other types of carcinoma (8523)
CL Item
Infiltrating lobular mixed with other types of carcinoma (8524)
CL Item
Inflammatory carcinoma (8530)
CL Item
Paget Disease mammary (8540)
CL Item
Paget Disease and infiltrating duct carcinoma (8541)
CL Item
Paget Disease and intraductal carcinoma (8543)
CL Item
Fibrosarcoma NOS (8810)
CL Item
Leiomyosarcoma NOS (8890)
CL Item
Malignant Phyllodes tumor (9020)
Item
Estrogen receptor status
text
C2919271 (UMLS CUI [1,1])
Code List
Estrogen receptor status
CL Item
Not done (0)
CL Item
Positive (1)
CL Item
Negative (2)
CL Item
Borderline (3)
CL Item
Ordered, no results in chart (8)
CL Item
Unknown (9)
Item
Progesterone receptor status
text
C2919590 (UMLS CUI [1,1])
Code List
Progesterone receptor status
CL Item
not done, (0)
CL Item
Positive (1)
CL Item
Negative (2)
CL Item
Borderline (3)
CL Item
Ordered, no results in chart (8)
CL Item
Unknown (9)

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