ID
45980
Description
Principal Investigator: Hanlee Ji, MD, Stanford University School of Medicine, Stanford, CA, USA MeSH: Colorectal Neoplasms https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs000898 We experimentally determined Mb-scale haplotypes from germline and cancer genome sequencing. Using a microfluidic process that partitions long DNA fragments into hundreds of thousands of barcoded reactions, we determined haplotype blocks from matched colorectal cancer samples in the delineation of haplotypes of allelic imbalances and other genomic instability events.
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- 4/2/24 4/2/24 - Madita Rudolph
Copyright Holder
Hanlee Ji, MD, Stanford University School of Medicine, Stanford, CA, USA
Uploaded on
April 2, 2024
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License
Creative Commons BY 4.0
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dbGaP phs000898 Megabase-scale Haplotyped Genomic Analysis of Normal and Cancer Genomes
Subject ID, consent group, and affection status of participants with cancer and involved in the "Megabase-scale Haplotyped Genomic Analysis of Normal and Cancer Genomes" project.
- StudyEvent: SEV1
- Subject ID, consent group, and affection status of participants with cancer and involved in the "Megabase-scale Haplotyped Genomic Analysis of Normal and Cancer Genomes" project.
- Subject ID, sample ID, and sample use variable obtained from participants with cancer and involved in the "Megabase-scale Haplotyped Genomic Analysis of Normal and Cancer Genomes" project.
- Subject ID and sex of participants with cancer and involved in the "Megabase-scale Haplotyped Genomic Analysis of Normal and Cancer Genomes" project.
- Sample ID, body site where sample was obtained, analyte type, tumor status of sample, primary or metastatic tumor, and tumor location of participants with cancer and involved in the "Megabase-scale Haplotyped Genomic Analysis of Normal and Cancer Genomes" project.
Similar models
Subject ID, consent group, and affection status of participants with cancer and involved in the "Megabase-scale Haplotyped Genomic Analysis of Normal and Cancer Genomes" project.
- StudyEvent: SEV1
- Subject ID, consent group, and affection status of participants with cancer and involved in the "Megabase-scale Haplotyped Genomic Analysis of Normal and Cancer Genomes" project.
- Subject ID, sample ID, and sample use variable obtained from participants with cancer and involved in the "Megabase-scale Haplotyped Genomic Analysis of Normal and Cancer Genomes" project.
- Subject ID and sex of participants with cancer and involved in the "Megabase-scale Haplotyped Genomic Analysis of Normal and Cancer Genomes" project.
- Sample ID, body site where sample was obtained, analyte type, tumor status of sample, primary or metastatic tumor, and tumor location of participants with cancer and involved in the "Megabase-scale Haplotyped Genomic Analysis of Normal and Cancer Genomes" project.
C0441833 (UMLS CUI [1,2])
C0150312 (UMLS CUI [1,2])
C0332197 (UMLS CUI [1,3])