ID

45976

Description

Principal Investigator: Dan Roden, MD, Vanderbilt University Medical Center, Nashville, TN, USA MeSH: Acute Kidney Injury https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs000894 The goal of this study was to identify genetic variants associated with risk for acute kidney injury (AKI) in patients being treated with vancomycin and genetic variants associated with variability in vancomycin pharmacokinetics. AKI is a common adverse drug event and known complication of vancomycin therapy. Known risk factors fail to accurately predict renal toxicity. Our hypothesis, that genetic variants modify the risk of AKI, was tested by performing genome-wide association and linear regression in 429 patients of European descent using the outcome of peak serum creatinine while on vancomycin. We also tested the hypothesis that genetic variants associate with vancomycin pharmacokinetics, using vancomycin trough levels and calculated renal elimination rate constant as outcomes.

Link

dbGaP study=phs000894

Keywords

  1. 4/2/24 4/2/24 - Madita Rudolph
Copyright Holder

Dan Roden, MD, Vanderbilt University Medical Center, Nashville, TN, USA

Uploaded on

April 2, 2024

DOI

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License

Creative Commons BY 4.0

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dbGaP phs000894 Genome Wide Study of Vancomycin

The dataset provides data of the quantitative outcome variable (i.e. highest serum creatinine levels measured in the first 2 weeks of intravenous vancomycin therapy, after at least three doses administered), and basic socio-demographic information (age, gender, race).

pht004660
Description

pht004660

Alias
UMLS CUI [1,1]
C3846158
De-identified Subject ID
Description

SUBJECT_ID

Data type

string

Alias
UMLS CUI [1,1]
C4684638
UMLS CUI [1,2]
C2348585
Age of participant
Description

age

Data type

text

Alias
UMLS CUI [1,1]
C0001779
Gender of participant
Description

gender

Data type

text

Alias
UMLS CUI [1,1]
C0079399
Race of participant
Description

race

Data type

text

Alias
UMLS CUI [1,1]
C0034510
Quantitative outcome variable
Description

LN_PEAK_CR

Data type

text

Alias
UMLS CUI [1,1]
C1547647
UMLS CUI [1,2]
C0392762

Similar models

The dataset provides data of the quantitative outcome variable (i.e. highest serum creatinine levels measured in the first 2 weeks of intravenous vancomycin therapy, after at least three doses administered), and basic socio-demographic information (age, gender, race).

Name
Type
Description | Question | Decode (Coded Value)
Data type
Alias
Item Group
pht004660
C3846158 (UMLS CUI [1,1])
SUBJECT_ID
Item
De-identified Subject ID
string
C4684638 (UMLS CUI [1,1])
C2348585 (UMLS CUI [1,2])
age
Item
Age of participant
text
C0001779 (UMLS CUI [1,1])
Item
Gender of participant
text
C0079399 (UMLS CUI [1,1])
Code List
Gender of participant
CL Item
Unknown (0)
CL Item
Female (F)
C0086287 (UMLS CUI [1,1])
CL Item
Male (M)
C0086582 (UMLS CUI [1,1])
CL Item
Not applicable (NA)
C1272460 (UMLS CUI [1,1])
Item
Race of participant
text
C0034510 (UMLS CUI [1,1])
Code List
Race of participant
CL Item
Asian (1)
CL Item
African American (2)
CL Item
Caucasian (3)
CL Item
Hispanic (5)
CL Item
Unknown (11)
Item
Quantitative outcome variable
text
C1547647 (UMLS CUI [1,1])
C0392762 (UMLS CUI [1,2])
Code List
Quantitative outcome variable
CL Item
missing (-9)

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