ID

45932

Description

Principal Investigator: Richard K. Wilson, Ph.D, The Genome Institute, Washington University School of Medicine, St. Louis, MO, USA MeSH: Amyotrophic Lateral Sclerosis https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs000831 Amyotrophic Lateral Sclerosis (ALS) is a neurodegenerative disease that affects the nerves in the brain and spinal cord, leading to muscle weakening and eventual paralysis and death. Ten percent of ALS cases are thought to be familial while the majority of cases are sporadic and the causative factors unknown. Dr. Roger Pamphlett of the University of Sydney has collected a unique cohort of consented trios where the child has ALS but the parents are unaffected. Since the age of onset is so late, it is very difficult to obtain this kind of trio. We have performed whole exome sequencing on these trios to identify *de novo* and recessive germline variants associated with sporadic ALS. In addition, Dr. Pamphlett has assembled a collection of consented discordant monozygotic twins, where one twin has ALS and the other is unaffected. We performed whole genome sequencing on these twin pairs to identify postzygotic variants that may contribute to sporadic ALS susceptibility. Finally, we have the opportunity to compare the sequence and gene expression in affected and unaffected tissues from blood, brain and/or spinal cord samples from consented ALS patients to look for somatic mutations or gene expression changes that may further our understanding of the disease.

Link

dbGaP study=phs000831

Keywords

  1. 3/9/24 3/9/24 - Madita Rudolph
Copyright Holder

Richard K. Wilson, Ph.D, The Genome Institute, Washington University School of Medicine, St. Louis, MO, USA

Uploaded on

March 9, 2024

DOI

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License

Creative Commons BY 4.0

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dbGaP phs000831 Sporadic Amyotrophic Lateral Sclerosis (ALS): Sequencing Study

Subject - Consent - Affection Status - Information

pht004904
Description

pht004904

Alias
UMLS CUI [1,1]
C3846158
De-identified Subject ID
Description

SUBJID

Data type

string

Alias
UMLS CUI [1,1]
C4684638
UMLS CUI [1,2]
C2348585
Allowable research use
Description

CONSENT

Data type

text

Alias
UMLS CUI [1,1]
C0021430
UMLS CUI [1,2]
C0242481
The subject's ALS affection status
Description

AFFECTION_STATUS

Data type

text

Alias
UMLS CUI [1,1]
C3274646

Similar models

Subject - Consent - Affection Status - Information

Name
Type
Description | Question | Decode (Coded Value)
Data type
Alias
Item Group
pht004904
C3846158 (UMLS CUI [1,1])
SUBJID
Item
De-identified Subject ID
string
C4684638 (UMLS CUI [1,1])
C2348585 (UMLS CUI [1,2])
Item
Allowable research use
text
C0021430 (UMLS CUI [1,1])
C0242481 (UMLS CUI [1,2])
Code List
Allowable research use
CL Item
Disease-Specific (Amyotrophic Lateral Sclerosis) (DS-ALS) (1)
Item
The subject's ALS affection status
text
C3274646 (UMLS CUI [1,1])
Code List
The subject's ALS affection status
CL Item
Unaffected (1)
C3274648 (UMLS CUI [1,1])
CL Item
Affected (2)
C3274647 (UMLS CUI [1,1])

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