ID

45929

Description

Principal Investigator: Julien Sage, PhD, Departments of Pediatrics and Genetics, Stanford University, Stanford, CA, USA MeSH: Fibrolamellar hepatocellular carcinoma,Carcinoma, Hepatocellular https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs000828 Fibrolamellar hepatocellular carcinoma (FL-HCC) is a very rare and distinct subtype of hepatocellular carcinoma that occurs in the previously healthy livers of adolescents and young adults. The low incidence rate has kept FL-HCC an understudied cancer, thus the list of FL-HCC markers is limited and the genetic alterations driving its growth have remained unknown. In order to gain a better understanding of the molecular mechanisms underlying FL-HCC initiation and progression, we performed an in-depth genomic analyses of one tumor followed by immunohistochemistry validation on seven other tumors. We showed the expression of neuroendocrine markers in FL-HCC. In addition, DNA/RNA sequencing revealed that common cancer pathways are not visibly altered in FL-HCC but identified two novel structural variants, both resulting in fusion transcripts. Through in vitro studies, we demonstrated the oncogenic properties of these fusion transcripts. These experiments further highlight the tumorigenic role of gene fusions in the etiology of pediatric solid tumors and identify both candidate biomarkers and possible therapeutic targets for this lethal pediatric disease.

Lien

dbGaP study id = phs000828

Mots-clés

  1. 04/03/2024 04/03/2024 - Dr. Christian Niklas
Détendeur de droits

Julien Sage, PhD, Departments of Pediatrics and Genetics, Stanford University, Stanford, CA, USA

Téléchargé le

4 mars 2024

DOI

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Licence

Creative Commons BY 4.0

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dbGaP phs000828 Genomic Analysis of Hepatocellular Carcinoma

Eligibility Criteria

Inclusion and exclusion criteria
Description

Inclusion and exclusion criteria

Alias
UMLS CUI [1,1]
C1512693
UMLS CUI [1,2]
C0680251
Cases were identified from Stanford University Hospital and Lucille Packard Children's Hospital.
Description

Elig.phs000828.v1.p1.1

Type de données

boolean

Alias
UMLS CUI [1,1]
C1302261
UMLS CUI [1,2]
C0949543
UMLS CUI [1,3]
C0019994
Inclusion Criteria:
Description

Elig.phs000828.v1.p1.2

Type de données

boolean

Alias
UMLS CUI [1,1]
C1512693
Age 45 or younger
Description

Elig.phs000828.v1.p1.3

Type de données

boolean

Alias
UMLS CUI [1,1]
C0001779
Diagnosis of Fibrolamellar Hepatocellular Carcinoma, confirmed by histological analysis by a secondary Pathologist
Description

Elig.phs000828.v1.p1.4

Type de données

boolean

Alias
UMLS CUI [1,1]
C0334287
UMLS CUI [1,2]
C0750484
UMLS CUI [1,3]
C0679557
Enough FFPE or frozen tissue of both tumor and normal for immunohistochemical analysis Exclusion Criteria: Patients with hepatitis, increased background parenchymal fibrosis or tumor morphology atypical of FL-HCC
Description

Elig.phs000828.v1.p1.5

Type de données

boolean

Alias
UMLS CUI [1,1]
C0021044
UMLS CUI [1,2]
C1292533
UMLS CUI [1,3]
C1265611
UMLS CUI [2,1]
C0680251
UMLS CUI [2,2]
C0019158
UMLS CUI [3,1]
C0680251
UMLS CUI [3,2]
C0239946
UMLS CUI [4,1]
C0680251
UMLS CUI [4,2]
C0332437
UMLS CUI [4,3]
C0205182
UMLS CUI [4,4]
C0334287

Similar models

Eligibility Criteria

Name
Type
Description | Question | Decode (Coded Value)
Type de données
Alias
Item Group
Inclusion and exclusion criteria
C1512693 (UMLS CUI [1,1])
C0680251 (UMLS CUI [1,2])
Elig.phs000828.v1.p1.1
Item
Cases were identified from Stanford University Hospital and Lucille Packard Children's Hospital.
boolean
C1302261 (UMLS CUI [1,1])
C0949543 (UMLS CUI [1,2])
C0019994 (UMLS CUI [1,3])
Elig.phs000828.v1.p1.2
Item
Inclusion Criteria:
boolean
C1512693 (UMLS CUI [1,1])
Elig.phs000828.v1.p1.3
Item
Age 45 or younger
boolean
C0001779 (UMLS CUI [1,1])
Elig.phs000828.v1.p1.4
Item
Diagnosis of Fibrolamellar Hepatocellular Carcinoma, confirmed by histological analysis by a secondary Pathologist
boolean
C0334287 (UMLS CUI [1,1])
C0750484 (UMLS CUI [1,2])
C0679557 (UMLS CUI [1,3])
Elig.phs000828.v1.p1.5
Item
Enough FFPE or frozen tissue of both tumor and normal for immunohistochemical analysis Exclusion Criteria: Patients with hepatitis, increased background parenchymal fibrosis or tumor morphology atypical of FL-HCC
boolean
C0021044 (UMLS CUI [1,1])
C1292533 (UMLS CUI [1,2])
C1265611 (UMLS CUI [1,3])
C0680251 (UMLS CUI [2,1])
C0019158 (UMLS CUI [2,2])
C0680251 (UMLS CUI [3,1])
C0239946 (UMLS CUI [3,2])
C0680251 (UMLS CUI [4,1])
C0332437 (UMLS CUI [4,2])
C0205182 (UMLS CUI [4,3])
C0334287 (UMLS CUI [4,4])

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