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ID

45925

Descrição

Principal Investigator: Francine Garrett-Bakelman, MD, PhD, University of Virginia, Charlottesville, VA, USA; Weill Cornell Medical College, New York, NY, USA MeSH: Acute Myeloid Leukemia https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs001027 Acute Myeloid Leukemia (AML) remains a clinical challenge since most patients diagnosed with AML will die from the disease. Some patients harbor treatment-refractory disease and many others relapse with disease that in many cases is resistant to treatments. Our study was designed to understand the molecular basis of disease progression in AML through assessing genomics signatures in patient specimens collected through an international collaboration which assembled samples from 138 AML patients which experienced disease relapse and normal hematopoietic cells (n=15). It is hoped that this resource will help researchers understand mechanisms of disease relapse in AML and contribute to the general pool of data available for analyses for this disease and general research use.

Link

dbGaP study = phs001027

Palavras-chave

  1. 27/02/2024 27/02/2024 - Simon Heim
Titular dos direitos

Francine Garrett-Bakelman, MD, PhD, University of Virginia, Charlottesville, VA, USA; Weill Cornell Medical College, New York, NY, USA

Transferido a

27 de fevereiro de 2024

DOI

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Licença

Creative Commons BY 4.0

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    dbGaP phs001027 Epigenomics Studies in Acute Myeloid Leukemia (AML)

    This sample attributes data table includes body site where sample was collected, analyte type, tumor status, histological type, metastatic status, primary tumor location, tumor stage and grade, tumor treatment, and sequencing center.

    pht005217
    Descrição

    pht005217

    Alias
    UMLS CUI [1,1]
    C3846158
    De-identified Sample ID
    Descrição

    SAMPLE_ID

    Tipo de dados

    string

    Alias
    UMLS CUI [1,1]
    C4684638
    UMLS CUI [1,2]
    C1299222
    Body site where sample was collected
    Descrição

    BODY_SITE

    Tipo de dados

    string

    Alias
    UMLS CUI [1,1]
    C0449705
    Analyte Type
    Descrição

    ANALYTE_TYPE

    Tipo de dados

    string

    Alias
    UMLS CUI [1,1]
    C4744818
    Tumor status
    Descrição

    IS_TUMOR

    Tipo de dados

    text

    Alias
    UMLS CUI [1,1]
    C0475752
    Cell or tissue type or subtype of sample
    Descrição

    HISTOLOGICAL_TYPE

    Tipo de dados

    string

    Alias
    UMLS CUI [1,1]
    C2347026
    UMLS CUI [1,2]
    C0007634
    UMLS CUI [1,3]
    C0332307
    UMLS CUI [2,1]
    C2347026
    UMLS CUI [2,2]
    C0007634
    UMLS CUI [2,3]
    C0449560
    UMLS CUI [3,1]
    C1292533
    UMLS CUI [3,2]
    C0332307
    UMLS CUI [4,1]
    C1292533
    UMLS CUI [4,2]
    C0449560
    Primary tumor (Primary) or not applicable (N/A)
    Descrição

    PRIMARY_METASTATIC_TUMOR

    Tipo de dados

    string

    Alias
    UMLS CUI [1,1]
    C1272460
    Primary tumor location
    Descrição

    PRIMARY_TUMOR_LOCATION

    Tipo de dados

    string

    Alias
    UMLS CUI [1,1]
    C0475447
    Tumor stage of sample
    Descrição

    TUMOR_STAGE

    Tipo de dados

    string

    Alias
    UMLS CUI [1,1]
    C1300072
    UMLS CUI [1,2]
    C0370003
    Tumor grade of sample
    Descrição

    TUMOR_GRADE

    Tipo de dados

    string

    Alias
    UMLS CUI [1,1]
    C0919553
    UMLS CUI [1,2]
    C0370003
    Type of tumor treatment for sample
    Descrição

    TUMOR_TREATMENT

    Tipo de dados

    string

    Alias
    UMLS CUI [1,1]
    C0087111
    UMLS CUI [1,2]
    C0332307
    UMLS CUI [1,3]
    C0006826
    UMLS CUI [1,4]
    C2347026
    Name of the center which conducted sequencing/source of raw data
    Descrição

    SEQUENCING_CENTER

    Tipo de dados

    text

    Alias
    UMLS CUI [1,1]
    C1301943
    UMLS CUI [1,2]
    C5575037
    UMLS CUI [1,3]
    C3640076
    UMLS CUI [2,1]
    C4684753
    UMLS CUI [2,2]
    C0011001

    Similar models

    This sample attributes data table includes body site where sample was collected, analyte type, tumor status, histological type, metastatic status, primary tumor location, tumor stage and grade, tumor treatment, and sequencing center.

    Name
    Tipo
    Description | Question | Decode (Coded Value)
    Tipo de dados
    Alias
    Item Group
    pht005217
    C3846158 (UMLS CUI [1,1])
    SAMPLE_ID
    Item
    De-identified Sample ID
    string
    C4684638 (UMLS CUI [1,1])
    C1299222 (UMLS CUI [1,2])
    BODY_SITE
    Item
    Body site where sample was collected
    string
    C0449705 (UMLS CUI [1,1])
    ANALYTE_TYPE
    Item
    Analyte Type
    string
    C4744818 (UMLS CUI [1,1])
    Item
    Tumor status
    text
    C0475752 (UMLS CUI [1,1])
    Code List
    Tumor status
    CL Item
    Is not a tumor (N)
    C0027651 (UMLS CUI [1,1])
    C1518422 (UMLS CUI [1,2])
    CL Item
    Is Tumor (Y)
    C0027651 (UMLS CUI [1,1])
    HISTOLOGICAL_TYPE
    Item
    Cell or tissue type or subtype of sample
    string
    C2347026 (UMLS CUI [1,1])
    C0007634 (UMLS CUI [1,2])
    C0332307 (UMLS CUI [1,3])
    C2347026 (UMLS CUI [2,1])
    C0007634 (UMLS CUI [2,2])
    C0449560 (UMLS CUI [2,3])
    C1292533 (UMLS CUI [3,1])
    C0332307 (UMLS CUI [3,2])
    C1292533 (UMLS CUI [4,1])
    C0449560 (UMLS CUI [4,2])
    PRIMARY_METASTATIC_TUMOR
    Item
    Primary tumor (Primary) or not applicable (N/A)
    string
    C1272460 (UMLS CUI [1,1])
    PRIMARY_TUMOR_LOCATION
    Item
    Primary tumor location
    string
    C0475447 (UMLS CUI [1,1])
    TUMOR_STAGE
    Item
    Tumor stage of sample
    string
    C1300072 (UMLS CUI [1,1])
    C0370003 (UMLS CUI [1,2])
    TUMOR_GRADE
    Item
    Tumor grade of sample
    string
    C0919553 (UMLS CUI [1,1])
    C0370003 (UMLS CUI [1,2])
    TUMOR_TREATMENT
    Item
    Type of tumor treatment for sample
    string
    C0087111 (UMLS CUI [1,1])
    C0332307 (UMLS CUI [1,2])
    C0006826 (UMLS CUI [1,3])
    C2347026 (UMLS CUI [1,4])
    Item
    Name of the center which conducted sequencing/source of raw data
    text
    C1301943 (UMLS CUI [1,1])
    C5575037 (UMLS CUI [1,2])
    C3640076 (UMLS CUI [1,3])
    C4684753 (UMLS CUI [2,1])
    C0011001 (UMLS CUI [2,2])
    Code List
    Name of the center which conducted sequencing/source of raw data
    CL Item
    ERASMUS University Medical Center (1)
    CL Item
    Memorial Sloan Kettering Cancer Center (2)
    CL Item
    New York Genome Center (3)
    CL Item
    Epigenomics Core, Weill Cornell Medical College (4)
    CL Item
    EGA accession number EGAS00001000275 (5)

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