ID

45871

Description

Principal Investigator: Stacey Gabriel, PhD, Broad Institute, Boston, MA, USA MeSH: Myocardial Infarction https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs001000 MI cases were ascertained from two studies: (i) the British Heart Foundation Family Heart Study and (ii) the BRICCS Study. Control subjects were ascertained from the control subjects being recruited as part of the UK Aneurysm Growth Study (UKAGS). All exome sequencing was performed at the Broad Institute of Harvard and MIT; samples sequence capture was performed using Illumina's ICE Capture reagent and sequencing was performed on an Illumina HiSeq 2000 or 2500.

Link

dbGaP study = phs001000

Keywords

  1. 10/26/23 10/26/23 - Simon Heim
Copyright Holder

Stacey Gabriel, PhD, Broad Institute, Boston, MA, USA

Uploaded on

October 26, 2023

DOI

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License

Creative Commons BY 4.0

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dbGaP phs001000 MIGen_ExS: U. of Leicester

This subject sample mapping file contains a mapping of study subject IDs to sample IDs. Samples are the final preps submitted for genotyping, sequencing, and/or expression data. For example, if one patient (subject ID) gave one sample, and that sample was processed differently to generate 2 sequencing runs, there would be two rows, both using the same subject ID, but having 2 unique sample IDs. The data table also includes sample use.

pht005029
Description

pht005029

Alias
UMLS CUI [1,1]
C3846158
Subject ID
Description

SUBJID

Data type

string

Alias
UMLS CUI [1,1]
C2348585
Sample ID
Description

SAMPID

Data type

string

Alias
UMLS CUI [1,1]
C1299222
Type of data submitted. Seq_DNA_SNP_CNV: SNP and CNV genotypes derived from sequence data; Seq_DNA_WholeExome: Whole exome sequencing
Description

SAMPLE_USE

Data type

string

Alias
UMLS CUI [1,1]
C1511726
UMLS CUI [1,2]
C0332307
UMLS CUI [1,3]
C1515023

Similar models

This subject sample mapping file contains a mapping of study subject IDs to sample IDs. Samples are the final preps submitted for genotyping, sequencing, and/or expression data. For example, if one patient (subject ID) gave one sample, and that sample was processed differently to generate 2 sequencing runs, there would be two rows, both using the same subject ID, but having 2 unique sample IDs. The data table also includes sample use.

Name
Type
Description | Question | Decode (Coded Value)
Data type
Alias
Item Group
pht005029
C3846158 (UMLS CUI [1,1])
SUBJID
Item
Subject ID
string
C2348585 (UMLS CUI [1,1])
SAMPID
Item
Sample ID
string
C1299222 (UMLS CUI [1,1])
SAMPLE_USE
Item
Type of data submitted. Seq_DNA_SNP_CNV: SNP and CNV genotypes derived from sequence data; Seq_DNA_WholeExome: Whole exome sequencing
string
C1511726 (UMLS CUI [1,1])
C0332307 (UMLS CUI [1,2])
C1515023 (UMLS CUI [1,3])

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