ID

45866

Beskrivning

Principal Investigator: Richard Wilson, McDonnell Genome Institute, Washington University School of Medicine, St. Louis, MO, USA MeSH: https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs001005 This study of three metastatic melanoma patients utilized exome sequencing and RNA sequencing to help identify putative neoantigen peptides that could be further validated by standard immunological assays before design of a personalized vaccine. For each set of neoantigens identified and verified by standard assays, we designed GMP peptides that correspond to the top neoantigens, then used these to condition dendritic cell isolates from each patient. The conditioned dendritic cells were used as the vaccine in three rounds of vaccination, followed by monitoring for T cell memory response to each of the neoantigens.

Länk

dbGaP study = phs001005

Nyckelord

  1. 2023-10-14 2023-10-14 - Simon Heim
Rättsinnehavare

Richard Wilson, McDonnell Genome Institute, Washington University School of Medicine, St. Louis, MO, USA

Uppladdad den

14 oktober 2023

DOI

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Licens

Creative Commons BY 4.0

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dbGaP phs001005 Antigen Discovery in Melanoma

Sample ID, histological type, analyte type, body site where sample was obtained, tumor status of sample, and year when sample was collected from participants with melanoma and involved in the "Identification of Putative Neoantigens in Stage III Melanoma" project.

pht005041
Beskrivning

pht005041

Alias
UMLS CUI [1,1]
C3846158
Sample ID
Beskrivning

SAMPLE_ID

Datatyp

string

Alias
UMLS CUI [1,1]
C1299222
Type of sample
Beskrivning

HISTOLOGICAL_TYPE

Datatyp

string

Alias
UMLS CUI [1,1]
C2347029
Sample nucleic acid type
Beskrivning

ANALYTE_TYPE

Datatyp

string

Alias
UMLS CUI [1,1]
C5419066
Body site from which sample was collected
Beskrivning

BODY_SITE

Datatyp

string

Alias
UMLS CUI [1,1]
C1515974
UMLS CUI [1,2]
C0370003
Tumor status of the sample
Beskrivning

IS_TUMOR

Datatyp

string

Alias
UMLS CUI [1,1]
C0475752
Year the sample was collected
Beskrivning

SAMPLE_YEAR

Datatyp

string

Alias
UMLS CUI [1,1]
C0200345
UMLS CUI [1,2]
C1442880
UMLS CUI [1,3]
C0439234

Similar models

Sample ID, histological type, analyte type, body site where sample was obtained, tumor status of sample, and year when sample was collected from participants with melanoma and involved in the "Identification of Putative Neoantigens in Stage III Melanoma" project.

Name
Typ
Description | Question | Decode (Coded Value)
Datatyp
Alias
Item Group
pht005041
C3846158 (UMLS CUI [1,1])
SAMPLE_ID
Item
Sample ID
string
C1299222 (UMLS CUI [1,1])
HISTOLOGICAL_TYPE
Item
Type of sample
string
C2347029 (UMLS CUI [1,1])
ANALYTE_TYPE
Item
Sample nucleic acid type
string
C5419066 (UMLS CUI [1,1])
BODY_SITE
Item
Body site from which sample was collected
string
C1515974 (UMLS CUI [1,1])
C0370003 (UMLS CUI [1,2])
IS_TUMOR
Item
Tumor status of the sample
string
C0475752 (UMLS CUI [1,1])
SAMPLE_YEAR
Item
Year the sample was collected
string
C0200345 (UMLS CUI [1,1])
C1442880 (UMLS CUI [1,2])
C0439234 (UMLS CUI [1,3])

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