ID
45831
Description
Principal Investigator: Jeffrey Sosman, MD, Vanderbilt University Medical Center, Nashville, TN, USA MeSH: Melanoma https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs001036 In this study, we performed paired tumor/normal long insert whole genome and exome sequencing and tumor RNA sequencing on primary or metastatic acral melanoma tumors collected from 34 patients. Patients were enrolled from either Vanderbilt University or the Memorial Sloan-Kettering Cancer Center. We report an integrated analysis of DNA and RNA sequencing data to describe genomic and transcriptomic characteristics of acral melanoma.
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Versions (1)
- 8/5/23 8/5/23 - Simon Heim
Copyright Holder
Jeffrey Sosman, MD, Vanderbilt University Medical Center, Nashville, TN, USA
Uploaded on
August 5, 2023
DOI
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License
Creative Commons BY 4.0
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dbGaP phs001036 Genomic Characterization of Acral Melanoma
This sample attributes table contains sample ID, body site where sample was collected, analyte type, tumor status (n=3 variables; is tumor or not, primary tumor or metastasis, and tumor stage), and name of the center which conducted sequencing.
- StudyEvent: SEV1
- The subject consent file includes subject IDs and consent information.
- This data table contains a mapping of study subject IDs to sample IDs. Samples are the final preps submitted for genotyping, sequencing, and/or expression data. For example, if one patient (subject ID) gave one sample, and that sample was processed differently to generate 2 sequencing runs, there would be two rows, both using the same subject ID, but having 2 unique sample IDs. The data table also includes sample use.
- This subject phenotype table contains subject ID, age at biopsy, sex and race of participant.
- This sample attributes table contains sample ID, body site where sample was collected, analyte type, tumor status (n=3 variables; is tumor or not, primary tumor or metastasis, and tumor stage), and name of the center which conducted sequencing.
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This sample attributes table contains sample ID, body site where sample was collected, analyte type, tumor status (n=3 variables; is tumor or not, primary tumor or metastasis, and tumor stage), and name of the center which conducted sequencing.
- StudyEvent: SEV1
- The subject consent file includes subject IDs and consent information.
- This data table contains a mapping of study subject IDs to sample IDs. Samples are the final preps submitted for genotyping, sequencing, and/or expression data. For example, if one patient (subject ID) gave one sample, and that sample was processed differently to generate 2 sequencing runs, there would be two rows, both using the same subject ID, but having 2 unique sample IDs. The data table also includes sample use.
- This subject phenotype table contains subject ID, age at biopsy, sex and race of participant.
- This sample attributes table contains sample ID, body site where sample was collected, analyte type, tumor status (n=3 variables; is tumor or not, primary tumor or metastasis, and tumor stage), and name of the center which conducted sequencing.
C1299222 (UMLS CUI [1,2])
C0027651 (UMLS CUI [1,2])
C0027627 (UMLS CUI [1,2])
C0449450 (UMLS CUI [1,2])
C5575037 (UMLS CUI [1,2])
C1561491 (UMLS CUI [1,3])