ID
45808
Descripción
Principal Investigator: Matthew Goetz, MD, Mayo Clinic, Rochester, MN, USA MeSH: Breast Neoplasms,Carcinoma, Ductal, Breast https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs001050 The Breast Cancer Genome Guided Therapy Study (BEAUTY) is a prospective neoadjuvant clinical study enrolling 140 women with Stage I-III breast cancer. The goals of this study were to 1) perform comprehensive sequencing of germline and tumor tissues (exome and RNA seq), 2) identify genomic alterations and perturbed pathways associated with response/resistance to standard chemotherapy, and 3) develop patient-derived xenograft (PDX) for testing of therapeutic regimens chosen on the basis of alterations identified by genetic sequencing.
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Versiones (1)
- 23/6/23 23/6/23 - Simon Heim
Titular de derechos de autor
Matthew Goetz, MD, Mayo Clinic, Rochester, MN, USA
Subido en
23 de junio de 2023
DOI
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Licencia
Creative Commons BY 4.0
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dbGaP phs001050 Breast Cancer Genome Guided Therapy Study (BEAUTY)
Eligibility Criteria
- StudyEvent: SEV1
- Eligibility Criteria
- The subject consent file includes subject IDs, consent information, and case control status of the subject. All subjects are patients with Stage I-III breast cancer.
- This data table contains a mapping of study subject IDs to sample IDs. Samples are the final preps submitted for genotyping, sequencing, and/or expression data. For example, if one patient (subject ID) gave one sample, and that sample was processed differently to generate 2 sequencing runs, there would be two rows, both using the same subject ID, but having 2 unique sample IDs. The data table also includes sample aliases and sample use.
- This subject phenotype table contains subject ID, pathological complete response in breast and nodes, clinical molecular tumor type, tumor stage, nodal stage, lab estimate of tumor percentage at baseline, Ki67 sensitivity, estrogen and progesterone receptor level, HER2 results by IHC or Fish, and patient age.
- This sample attributes table contains sample ID, body site where sample was collected, analyte type, tumor status, histologic type, primary metastatic tumor, primary tumor location, tumor stage, grade, treatment, name of the center which conducted sequencing, portion of sequencing lane, and comments.
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Eligibility Criteria
- StudyEvent: SEV1
- Eligibility Criteria
- The subject consent file includes subject IDs, consent information, and case control status of the subject. All subjects are patients with Stage I-III breast cancer.
- This data table contains a mapping of study subject IDs to sample IDs. Samples are the final preps submitted for genotyping, sequencing, and/or expression data. For example, if one patient (subject ID) gave one sample, and that sample was processed differently to generate 2 sequencing runs, there would be two rows, both using the same subject ID, but having 2 unique sample IDs. The data table also includes sample aliases and sample use.
- This subject phenotype table contains subject ID, pathological complete response in breast and nodes, clinical molecular tumor type, tumor stage, nodal stage, lab estimate of tumor percentage at baseline, Ki67 sensitivity, estrogen and progesterone receptor level, HER2 results by IHC or Fish, and patient age.
- This sample attributes table contains sample ID, body site where sample was collected, analyte type, tumor status, histologic type, primary metastatic tumor, primary tumor location, tumor stage, grade, treatment, name of the center which conducted sequencing, portion of sequencing lane, and comments.
C0680251 (UMLS CUI [1,2])
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C1512693 (UMLS CUI [2,1])
C0205462 (UMLS CUI [2,2])
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C1512693 (UMLS CUI [3,1])
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C1512693 (UMLS CUI [4,1])
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C1512693 (UMLS CUI [5,1])
C0441988 (UMLS CUI [5,2])
C0853879 (UMLS CUI [5,3])
C0205563 (UMLS CUI [5,4])
C0221198 (UMLS CUI [5,5])
C0947630 (UMLS CUI [5,6])
C0005558 (UMLS CUI [5,7])
C0475358 (UMLS CUI [5,8])
C1512693 (UMLS CUI [6,1])
C0021430 (UMLS CUI [6,2])
C1512693 (UMLS CUI [7,1])
C0600109 (UMLS CUI [7,2])
C2347790 (UMLS CUI [7,3])
C0011923 (UMLS CUI [7,4])
C0543467 (UMLS CUI [7,5])
C1522577 (UMLS CUI [7,6])
C1512693 (UMLS CUI [8,1])
C0600109 (UMLS CUI [8,2])
C1292533 (UMLS CUI [8,3])
C0178913 (UMLS CUI [8,4])
C0242481 (UMLS CUI [8,5])
C1512693 (UMLS CUI [9,1])
C1520224 (UMLS CUI [9,2])
C0680251 (UMLS CUI [10,1])
C1515974 (UMLS CUI [10,2])
C0004454 (UMLS CUI [10,3])
C1548966 (UMLS CUI [10,4])
C0680251 (UMLS CUI [11,1])
C0949266 (UMLS CUI [11,2])
C0680251 (UMLS CUI [12,1])
C0205394 (UMLS CUI [12,2])
C0205177 (UMLS CUI [12,3])
C0006826 (UMLS CUI [12,4])
C1948053 (UMLS CUI [12,5])
C0332300 (UMLS CUI [12,6])
C3846158 (UMLS CUI [12,7])
C0851140 (UMLS CUI [12,8])
C0680251 (UMLS CUI [13,1])
C1298908 (UMLS CUI [13,2])
C0162425 (UMLS CUI [13,3])
C5392214 (UMLS CUI [13,4])
C0680251 (UMLS CUI [14,1])
C0441772 (UMLS CUI [14,2])
C0005558 (UMLS CUI [14,3])
C0680251 (UMLS CUI [15,1])
C5443927 (UMLS CUI [15,2])
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