ID

45807

Beschrijving

Principal Investigator: Adam Resnick, PhD, The Children's Hospital of Philadelphia, Perelman School of Medicine at the University of Pennsylvania, PA, USA MeSH: Glioma,Astrocytoma https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs001054 Pediatric low-grade gliomas (PLGGs) are the most common pediatric brain-tumor, with more than ten histologic subtypes recognized by the World Health Organization. We performed a genomic analysis of 230 PLGGs of which 73 had whole genome/RNA sequencing performed and show that MYB-QKI fusions define the seizure associated tumor, Angiocentric Glioma (AG). MYB-QKI fusions present in AGs contribute to tumorigenesis through three mechanisms: MYB activation by truncation, enhancer translocation driving aberrant MYB-QKI expression, and hemizygous loss of QKI, a tumor suppressor gene. Such interplay between three oncogenic mechanisms has diagnostic and therapeutic implications in AGs, and illustrates the functional complexity associated with rearrangements in cancer.

Link

dbGaP-study=phs001054

Trefwoorden

  1. 23-06-23 23-06-23 - Chiara Middel
Houder van rechten

Adam Resnick, PhD, The Children's Hospital of Philadelphia, Perelman School of Medicine at the University of Pennsylvania, PA, USA

Geüploaded op

23 juni 2023

DOI

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Licentie

Creative Commons BY 4.0

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dbGaP phs001054 Genomic Characterization of Pediatric Low-Grade Gliomas

Sample ID, analyte type, tumor status of sample, histological type, whether the sample is recurrent tumor, and body site where sample was collected of participants with pediatric low-grade gliomas and involved in the "Genomic Characterization of Pediatric Low-Grade Gliomas" project.

pht005279
Beschrijving

pht005279

Alias
UMLS CUI [1,1]
C3846158
De-identified sample ID
Beschrijving

SAMPID

Datatype

string

Alias
UMLS CUI [1,1]
C4684638
UMLS CUI [1,2]
C1299222
Sample content analyzed
Beschrijving

ANALYTE_TYPE

Datatype

string

Alias
UMLS CUI [1,1]
C2347026
UMLS CUI [1,2]
C0456205
UMLS CUI [1,3]
C0936012
Tumor status
Beschrijving

IS_TUMOR

Datatype

text

Alias
UMLS CUI [1,1]
C0475752
Cell or tissue type or subtype of sample
Beschrijving

HISTOLOGICAL_TYPE

Datatype

string

Alias
UMLS CUI [1,1]
C2347026
UMLS CUI [1,2]
C0007634
UMLS CUI [1,3]
C0332307
UMLS CUI [2,1]
C2347026
UMLS CUI [2,2]
C0007634
UMLS CUI [2,3]
C0449560
UMLS CUI [3,1]
C1292533
UMLS CUI [3,2]
C0332307
UMLS CUI [4,1]
C1292533
UMLS CUI [4,2]
C0449560
Whether the sample is from a recurrent tumor
Beschrijving

IS_RECURRENT

Datatype

text

Alias
UMLS CUI [1,1]
C2347026
UMLS CUI [1,2]
C0277556
UMLS CUI [1,3]
C1512698
Body site where sample was collected
Beschrijving

BODY_SITE

Datatype

string

Alias
UMLS CUI [1,1]
C0449705

Similar models

Sample ID, analyte type, tumor status of sample, histological type, whether the sample is recurrent tumor, and body site where sample was collected of participants with pediatric low-grade gliomas and involved in the "Genomic Characterization of Pediatric Low-Grade Gliomas" project.

Name
Type
Description | Question | Decode (Coded Value)
Datatype
Alias
Item Group
pht005279
C3846158 (UMLS CUI [1,1])
SAMPID
Item
De-identified sample ID
string
C4684638 (UMLS CUI [1,1])
C1299222 (UMLS CUI [1,2])
ANALYTE_TYPE
Item
Sample content analyzed
string
C2347026 (UMLS CUI [1,1])
C0456205 (UMLS CUI [1,2])
C0936012 (UMLS CUI [1,3])
Item
Tumor status
text
C0475752 (UMLS CUI [1,1])
Code List
Tumor status
CL Item
Is not a tumor (N)
C0027651 (UMLS CUI [1,1])
C1518422 (UMLS CUI [1,2])
CL Item
Is tumor (Y)
C0027651 (UMLS CUI [1,1])
HISTOLOGICAL_TYPE
Item
Cell or tissue type or subtype of sample
string
C2347026 (UMLS CUI [1,1])
C0007634 (UMLS CUI [1,2])
C0332307 (UMLS CUI [1,3])
C2347026 (UMLS CUI [2,1])
C0007634 (UMLS CUI [2,2])
C0449560 (UMLS CUI [2,3])
C1292533 (UMLS CUI [3,1])
C0332307 (UMLS CUI [3,2])
C1292533 (UMLS CUI [4,1])
C0449560 (UMLS CUI [4,2])
Item
Whether the sample is from a recurrent tumor
text
C2347026 (UMLS CUI [1,1])
C0277556 (UMLS CUI [1,2])
C1512698 (UMLS CUI [1,3])
Code List
Whether the sample is from a recurrent tumor
CL Item
Is a primarily resected tumor (N)
CL Item
not applicable (NA)
C1272460 (UMLS CUI [1,1])
CL Item
Is a recurrent tumor (Y)
BODY_SITE
Item
Body site where sample was collected
string
C0449705 (UMLS CUI [1,1])

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