ID

45806

Beschrijving

Principal Investigator: Stacey Gabriel, PhD, Broad Institute, Boston, MA, USA MeSH: Myocardial Infarction https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs001058 The BioImage Study (BioImage Study: A Clinical Study of Burden of Atherosclerotic Disease in an At-Risk Population, NCT00738725), is a prospective, observational study aimed at characterizing subclinical atherosclerosis in U.S. adults (55 to 80 years old) at risk for clinical atherosclerotic cardiovascular disease (PMID: 25790876). All exome sequencing was performed at the Broad Institute of Harvard and MIT; samples sequence capture was performed using Illumina's ICE Capture reagent and sequencing was performed on an Illumina HiSeq 2000 or 2500.

Link

dbGaP-study=phs001058

Trefwoorden

  1. 23-06-23 23-06-23 - Chiara Middel
Houder van rechten

Stacey Gabriel, PhD, Broad Institute, Boston, MA, USA

Geüploaded op

23 juni 2023

DOI

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Licentie

Creative Commons BY 4.0

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dbGaP phs001058 MIGen_ExS: BioImage Study

This subject sample mapping file contains a mapping of study subject IDs to sample IDs. Samples are the final preps submitted for genotyping, sequencing, and/or expression data. For example, if one patient (subject ID) gave one sample, and that sample was processed differently to generate 2 sequencing runs, there would be two rows, both using the same subject ID, but having 2 unique sample IDs. The data table also includes sample use.

pht005236
Beschrijving

pht005236

Alias
UMLS CUI [1,1]
C3846158
Subject ID
Beschrijving

SUBJID

Datatype

string

Alias
UMLS CUI [1,1]
C2348585
Sample ID
Beschrijving

SAMPID

Datatype

string

Alias
UMLS CUI [1,1]
C1299222
Type of data submitted. Seq_DNA_SNP_CNV: SNP and CNV genotypes derived from sequence data; Seq_DNA_WholeExome: Whole exome sequencing
Beschrijving

SAMPLE_USE

Datatype

text

Alias
UMLS CUI [1,1]
C1511726
UMLS CUI [1,2]
C0332307
UMLS CUI [1,3]
C1515023

Similar models

This subject sample mapping file contains a mapping of study subject IDs to sample IDs. Samples are the final preps submitted for genotyping, sequencing, and/or expression data. For example, if one patient (subject ID) gave one sample, and that sample was processed differently to generate 2 sequencing runs, there would be two rows, both using the same subject ID, but having 2 unique sample IDs. The data table also includes sample use.

Name
Type
Description | Question | Decode (Coded Value)
Datatype
Alias
Item Group
pht005236
C3846158 (UMLS CUI [1,1])
SUBJID
Item
Subject ID
string
C2348585 (UMLS CUI [1,1])
SAMPID
Item
Sample ID
string
C1299222 (UMLS CUI [1,1])
SAMPLE_USE
Item
Type of data submitted. Seq_DNA_SNP_CNV: SNP and CNV genotypes derived from sequence data; Seq_DNA_WholeExome: Whole exome sequencing
text
C1511726 (UMLS CUI [1,1])
C0332307 (UMLS CUI [1,2])
C1515023 (UMLS CUI [1,3])

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