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ID

45770

Beskrivning

Principal Investigator: William C. Hahn, MD, PhD, Dana-Farber Cancer Institute, Boston, MA, USA MeSH: Sarcoma https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs001121 Due to the paucity of patient derived models in rare cancers, identification of therapeutic targets remains challenging. We developed a patient derived model, CLF-PED-015-T, from a patient with an undifferentiated sarcoma. From this model, we performed pooled RNAi and CRISPR-Cas9 negative selection screens and integrated that with a small molecule screen. Integration of these data identified CDK4 and XPO1 as potential therapeutic targets.

Länk

dbGaP-study=phs001121

Nyckelord

  1. 6/19/23 6/19/23 - Chiara Middel
Rättsinnehavare

William C. Hahn, MD, PhD, Dana-Farber Cancer Institute, Boston, MA, USA

Uppladdad den

June 19, 2023

DOI

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Licens

Creative Commons BY 4.0

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    dbGaP phs001121 Integrated Genetic and Pharmacologic Interrogation of Rare Cancers

    This data table contains a mapping of study subject IDs to sample IDs. Samples are the final preps submitted for genotyping, sequencing, and/or expression data. For example, if one patient (subject ID) gave one sample, and that sample was processed differently to generate 2 sequencing runs, there would be two rows, both using the same subject ID, but having 2 unique sample IDs. The data table also includes sample use.

    pht005709
    Beskrivning

    pht005709

    Alias
    UMLS CUI [1,1]
    C3846158
    Subject ID
    Beskrivning

    SUBJID

    Datatyp

    string

    Alias
    UMLS CUI [1,1]
    C2348585
    Sample ID
    Beskrivning

    SAMPID

    Datatyp

    string

    Alias
    UMLS CUI [1,1]
    C1299222
    Use of samples. Seq_DNA_SNP_MAF_Sum: Samples were used to generate aggregate mutation annotation file (.maf); Seq_DNA_WholeExome: Whole exome sequencing; Seq_RNA: Whole transcriptome sequencing
    Beskrivning

    SAMPLE_USE

    Datatyp

    text

    Alias
    UMLS CUI [1,1]
    C3640077

    Similar models

    This data table contains a mapping of study subject IDs to sample IDs. Samples are the final preps submitted for genotyping, sequencing, and/or expression data. For example, if one patient (subject ID) gave one sample, and that sample was processed differently to generate 2 sequencing runs, there would be two rows, both using the same subject ID, but having 2 unique sample IDs. The data table also includes sample use.

    Name
    Typ
    Description | Question | Decode (Coded Value)
    Datatyp
    Alias
    Item Group
    pht005709
    C3846158 (UMLS CUI [1,1])
    SUBJID
    Item
    Subject ID
    string
    C2348585 (UMLS CUI [1,1])
    SAMPID
    Item
    Sample ID
    string
    C1299222 (UMLS CUI [1,1])
    SAMPLE_USE
    Item
    Use of samples. Seq_DNA_SNP_MAF_Sum: Samples were used to generate aggregate mutation annotation file (.maf); Seq_DNA_WholeExome: Whole exome sequencing; Seq_RNA: Whole transcriptome sequencing
    text
    C3640077 (UMLS CUI [1,1])

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