ID

45735

Descrição

Principal Investigator: Rex Chisholm, PhD, Northwestern University, Chicago, IL, USA MeSH: Healthy Volunteers https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs001191 The NUgene Project is a biorepository with longitudinal medical information from participating patients at Northwestern Medicine affiliated hospitals and outpatient clinics. Participants' DNA samples are coupled with data from a self-reported questionnaire (2 versions were used, 1 before and 1 after February 2006, both are included) and continuously updated data from our Electronic Medical Record (EMR) representing actual clinical care events. Northwestern has a state-of-the art, comprehensive inpatient and outpatient EMR system of over 3 million patients. NUgene has broad access to participant data for all outpatient visits as well as inpatient data via a consolidated enterprise data warehouse. NUgene participants consent to distribution and use of their coded DNA samples and data for a broad range of genetic research by third-party investigators. The **e**lectronic **M**edical**R**ecords and **Ge**nomics (eMERGE) Network is a consortium of 9 clinical sites with EMR linked DNA biobanks, including Northwestern University and its NUgene biobank, funded by the NHGRI (National Human Genome Research Institute) to investigate the use of electronic medical record systems for genomic research. The goal of eMERGE is to conduct genome-wide association studies in approximately 100,000 individuals using EMR-derived phenotypes and DNA from linked biorepositories. Using electronic phenotyping methods, the consortium has been and is using DNA samples from all participating sites to explore the genetic determinants of approximately 80 phenotypes, including both diseases and traits, for which the electronic phenotyping algorithms have or are being published on PheKB.org. Thus, for the eMERGE network, ~900 NUgene subjects were selected, as described in the study inclusion/exclusion criteria section below, to be genotyped using whole genome sequencing (WGS), for use in the eMERGE network as eMERGE subjects. The criteria used below were selected so that these subjects will likely meet the criteria to be cases and/or controls, of diverse races and/or ethnicities, for at least 1 of the ~80 phenotypes being studied within eMERGE, and could be recontacted for future research if needed.

Link

dbGaP-study=phs001191

Palavras-chave

  1. 01/06/2023 01/06/2023 - Chiara Middel
Titular dos direitos

Rex Chisholm, PhD, Northwestern University, Chicago, IL, USA

Transferido a

1 de junho de 2023

DOI

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Licença

Creative Commons BY 4.0

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dbGaP phs001191 NUgene WGS

Eligibility Criteria

Inclusion and exclusion criteria
Descrição

Inclusion and exclusion criteria

Alias
UMLS CUI [1,1]
C1512693
UMLS CUI [1,2]
C0680251
NUgene subjects were selected for whole genome sequencing for use in eMERGE, based on the following inclusion criteria:
Descrição

Elig.phs001191.v1.p1.1

Tipo de dados

boolean

Alias
UMLS CUI [1,1]
C3640076
UMLS CUI [1,2]
C0242802
UMLS CUI [1,3]
C1512693
UMLS CUI [1,4]
C0243161
Subjects who had at least in-person clinical encounter (outpatient visit, inpatient hospital stay, etc.) at Northwestern Medicine within the last 3 years
Descrição

Elig.phs001191.v1.p1.2

Tipo de dados

boolean

Alias
UMLS CUI [1,1]
C0443144
UMLS CUI [1,2]
C0205210
UMLS CUI [1,3]
C1512346
UMLS CUI [1,4]
C0565990
UMLS CUI [1,5]
C0449238
Subjects who self-reported being one of the following races or ethnicities, especially if a minority race or ethnicity ethnicity (a higher number of minorities were targeted for selection in order to increase the number of potentially under-represented minorities within eMERGE):
Descrição

Elig.phs001191.v1.p1.3

Tipo de dados

boolean

Alias
UMLS CUI [1,1]
C0681906
UMLS CUI [1,2]
C0015031
UMLS CUI [1,3]
C0034510
UMLS CUI [1,4]
C0026192
Hispanic/Latino
Descrição

Elig.phs001191.v1.p1.4

Tipo de dados

boolean

Alias
UMLS CUI [1,1]
C0086409
UMLS CUI [1,2]
C0086528
African American
Descrição

Elig.phs001191.v1.p1.5

Tipo de dados

boolean

Alias
UMLS CUI [1,1]
C0085756
Caucasian
Descrição

Elig.phs001191.v1.p1.6

Tipo de dados

boolean

Alias
UMLS CUI [1,1]
C0043157
Subjects who could be recontacted for future research if needed, i.e., subjects who:
Descrição

Elig.phs001191.v1.p1.7

Tipo de dados

boolean

Alias
UMLS CUI [1,1]
C0681850
UMLS CUI [1,2]
C0521104
UMLS CUI [1,3]
C1522577
UMLS CUI [1,4]
C0016884
UMLS CUI [1,5]
C0035168
agreed to be re-contacted for future research
Descrição

Elig.phs001191.v1.p1.8

Tipo de dados

boolean

Alias
UMLS CUI [1,1]
C0521104
UMLS CUI [1,2]
C1522577
UMLS CUI [1,3]
C0016884
UMLS CUI [1,4]
C0035168
are alive (i.e., not deceased, at least according to our records)
Descrição

Elig.phs001191.v1.p1.9

Tipo de dados

boolean

Alias
UMLS CUI [1,1]
C2584946
are less than or equal to 81 years old (i.e., not as likely to be deceased)
Descrição

Elig.phs001191.v1.p1.10

Tipo de dados

boolean

Alias
UMLS CUI [1,1]
C0001779
and live in Chicago, IL or its surrounding area (incl. Illinois, Indiana, Michigan and Wisconsin).
Descrição

Elig.phs001191.v1.p1.11

Tipo de dados

boolean

Alias
UMLS CUI [1,1]
C0237096
UMLS CUI [1,2]
C0017446
UMLS CUI [1,3]
C1706276
After meeting all of the above criteria, an additional criteria was applied for most subjects: subjects who were not already genotyped to be eMERGE subjects. When this additional criteria was not applied, existing eMERGE subjects meeting all of the other criteria were selected either because they are a minority and/or because they are already known to have at least 1 of the 80 phenotypes of interest within eMERGE that have yet to be fully studied.
Descrição

Elig.phs001191.v1.p1.12

Tipo de dados

boolean

Alias
UMLS CUI [1,1]
C1550543
UMLS CUI [1,2]
C1516637
UMLS CUI [1,3]
C1524062
UMLS CUI [1,4]
C0243161
UMLS CUI [2,1]
C1285573
UMLS CUI [2,2]
C1272696
UMLS CUI [3,1]
C1524062
UMLS CUI [3,2]
C0243161
UMLS CUI [3,3]
C1272460
UMLS CUI [3,4]
C0242802
UMLS CUI [3,5]
C0681850
UMLS CUI [3,6]
C1550543
UMLS CUI [3,7]
C0205394
UMLS CUI [3,8]
C0243161
UMLS CUI [3,9]
C0015031
UMLS CUI [3,10]
C0026192
UMLS CUI [3,11]
C0205309
UMLS CUI [3,12]
C0031437
UMLS CUI [3,13]
C3699388

Similar models

Eligibility Criteria

Name
Tipo
Description | Question | Decode (Coded Value)
Tipo de dados
Alias
Item Group
Inclusion and exclusion criteria
C1512693 (UMLS CUI [1,1])
C0680251 (UMLS CUI [1,2])
Elig.phs001191.v1.p1.1
Item
NUgene subjects were selected for whole genome sequencing for use in eMERGE, based on the following inclusion criteria:
boolean
C3640076 (UMLS CUI [1,1])
C0242802 (UMLS CUI [1,2])
C1512693 (UMLS CUI [1,3])
C0243161 (UMLS CUI [1,4])
Elig.phs001191.v1.p1.2
Item
Subjects who had at least in-person clinical encounter (outpatient visit, inpatient hospital stay, etc.) at Northwestern Medicine within the last 3 years
boolean
C0443144 (UMLS CUI [1,1])
C0205210 (UMLS CUI [1,2])
C1512346 (UMLS CUI [1,3])
C0565990 (UMLS CUI [1,4])
C0449238 (UMLS CUI [1,5])
Elig.phs001191.v1.p1.3
Item
Subjects who self-reported being one of the following races or ethnicities, especially if a minority race or ethnicity ethnicity (a higher number of minorities were targeted for selection in order to increase the number of potentially under-represented minorities within eMERGE):
boolean
C0681906 (UMLS CUI [1,1])
C0015031 (UMLS CUI [1,2])
C0034510 (UMLS CUI [1,3])
C0026192 (UMLS CUI [1,4])
Elig.phs001191.v1.p1.4
Item
Hispanic/Latino
boolean
C0086409 (UMLS CUI [1,1])
C0086528 (UMLS CUI [1,2])
Elig.phs001191.v1.p1.5
Item
African American
boolean
C0085756 (UMLS CUI [1,1])
Elig.phs001191.v1.p1.6
Item
Caucasian
boolean
C0043157 (UMLS CUI [1,1])
Elig.phs001191.v1.p1.7
Item
Subjects who could be recontacted for future research if needed, i.e., subjects who:
boolean
C0681850 (UMLS CUI [1,1])
C0521104 (UMLS CUI [1,2])
C1522577 (UMLS CUI [1,3])
C0016884 (UMLS CUI [1,4])
C0035168 (UMLS CUI [1,5])
Elig.phs001191.v1.p1.8
Item
agreed to be re-contacted for future research
boolean
C0521104 (UMLS CUI [1,1])
C1522577 (UMLS CUI [1,2])
C0016884 (UMLS CUI [1,3])
C0035168 (UMLS CUI [1,4])
Elig.phs001191.v1.p1.9
Item
are alive (i.e., not deceased, at least according to our records)
boolean
C2584946 (UMLS CUI [1,1])
Elig.phs001191.v1.p1.10
Item
are less than or equal to 81 years old (i.e., not as likely to be deceased)
boolean
C0001779 (UMLS CUI [1,1])
Elig.phs001191.v1.p1.11
Item
and live in Chicago, IL or its surrounding area (incl. Illinois, Indiana, Michigan and Wisconsin).
boolean
C0237096 (UMLS CUI [1,1])
C0017446 (UMLS CUI [1,2])
C1706276 (UMLS CUI [1,3])
Elig.phs001191.v1.p1.12
Item
After meeting all of the above criteria, an additional criteria was applied for most subjects: subjects who were not already genotyped to be eMERGE subjects. When this additional criteria was not applied, existing eMERGE subjects meeting all of the other criteria were selected either because they are a minority and/or because they are already known to have at least 1 of the 80 phenotypes of interest within eMERGE that have yet to be fully studied.
boolean
C1550543 (UMLS CUI [1,1])
C1516637 (UMLS CUI [1,2])
C1524062 (UMLS CUI [1,3])
C0243161 (UMLS CUI [1,4])
C1285573 (UMLS CUI [2,1])
C1272696 (UMLS CUI [2,2])
C1524062 (UMLS CUI [3,1])
C0243161 (UMLS CUI [3,2])
C1272460 (UMLS CUI [3,3])
C0242802 (UMLS CUI [3,4])
C0681850 (UMLS CUI [3,5])
C1550543 (UMLS CUI [3,6])
C0205394 (UMLS CUI [3,7])
C0243161 (UMLS CUI [3,8])
C0015031 (UMLS CUI [3,9])
C0026192 (UMLS CUI [3,10])
C0205309 (UMLS CUI [3,11])
C0031437 (UMLS CUI [3,12])
C3699388 (UMLS CUI [3,13])

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