Information:
Error:
ID
45734
Description
Principal Investigator: John Thomas Poirier, PhD, Memorial Sloan Kettering Cancer Center, New York, NY, USA MeSH: Lung Neoplasms https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs001192 Targeted capture sequencing of 341 cancer associated genes in thoracic patient-derived xenografts.
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Keywords
Versions (1)
- 6/1/23 6/1/23 - Chiara Middel
Copyright Holder
John Thomas Poirier, PhD, Memorial Sloan Kettering Cancer Center, New York, NY, USA
Uploaded on
June 1, 2023
DOI
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License
Creative Commons BY 4.0
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dbGaP phs001192 Thoracic Patient-Derived Xenografts
Sample ID, analyte type, body site where sample was obtained, genotyping center, histological type, tumor status of sample, primary metastasis of tumor, primary tumor location, and sequencing center of participant with lung adenocarcinoma and involved in the "Thoracic Patient-Derived Xenografts" project.
- StudyEvent: SEV1
- Subject ID, subject source, source subject ID, consent group, and affection status of participant with lung adenocarcinoma and involved in the "Thoracic Patient-Derived Xenografts" project.
- Subject ID, sample ID, sample source, source sample ID, and sample use variable obtained from participant with lung adenocarcinoma and involved in the "Thoracic Patient-Derived Xenografts" project.
- Sample ID, analyte type, body site where sample was obtained, genotyping center, histological type, tumor status of sample, primary metastasis of tumor, primary tumor location, and sequencing center of participant with lung adenocarcinoma and involved in the "Thoracic Patient-Derived Xenografts" project.
Similar models
Sample ID, analyte type, body site where sample was obtained, genotyping center, histological type, tumor status of sample, primary metastasis of tumor, primary tumor location, and sequencing center of participant with lung adenocarcinoma and involved in the "Thoracic Patient-Derived Xenografts" project.
- StudyEvent: SEV1
- Subject ID, subject source, source subject ID, consent group, and affection status of participant with lung adenocarcinoma and involved in the "Thoracic Patient-Derived Xenografts" project.
- Subject ID, sample ID, sample source, source sample ID, and sample use variable obtained from participant with lung adenocarcinoma and involved in the "Thoracic Patient-Derived Xenografts" project.
- Sample ID, analyte type, body site where sample was obtained, genotyping center, histological type, tumor status of sample, primary metastasis of tumor, primary tumor location, and sequencing center of participant with lung adenocarcinoma and involved in the "Thoracic Patient-Derived Xenografts" project.
Name
Type
Description | Question | Decode (Coded Value)
Data type
Alias
SAMPLE_ID
Item
De-identified sample ID
string
C4684638 (UMLS CUI [1,1])
C1299222 (UMLS CUI [1,2])
C1299222 (UMLS CUI [1,2])
BODY_SITE
Item
Body site where sample was collected
string
C0449705 (UMLS CUI [1,1])
ANALYTE_TYPE
Item
Analyte type
string
C4744818 (UMLS CUI [1,1])
CL Item
Is not a tumor (N)
C0027651 (UMLS CUI [1,1])
C1518422 (UMLS CUI [1,2])
C1518422 (UMLS CUI [1,2])
CL Item
Is tumor (Y)
C0027651 (UMLS CUI [1,1])
HISTOLOGICAL_TYPE
Item
Cell or tissue type or subtype of sample
string
C2347026 (UMLS CUI [1,1])
C0007634 (UMLS CUI [1,2])
C0332307 (UMLS CUI [1,3])
C2347026 (UMLS CUI [2,1])
C0007634 (UMLS CUI [2,2])
C0449560 (UMLS CUI [2,3])
C1292533 (UMLS CUI [3,1])
C0332307 (UMLS CUI [3,2])
C1292533 (UMLS CUI [4,1])
C0449560 (UMLS CUI [4,2])
C0007634 (UMLS CUI [1,2])
C0332307 (UMLS CUI [1,3])
C2347026 (UMLS CUI [2,1])
C0007634 (UMLS CUI [2,2])
C0449560 (UMLS CUI [2,3])
C1292533 (UMLS CUI [3,1])
C0332307 (UMLS CUI [3,2])
C1292533 (UMLS CUI [4,1])
C0449560 (UMLS CUI [4,2])
PRIMARY_METASTATIC_TUMOR
Item
Primary tumor, metastasis, or transformed cell line
string
C0677930 (UMLS CUI [1,1])
C0027627 (UMLS CUI [2,1])
C0007601 (UMLS CUI [3,1])
C0027627 (UMLS CUI [2,1])
C0007601 (UMLS CUI [3,1])
PRIMARY_TUMOR_LOCATION
Item
Primary tumor location
string
C0475447 (UMLS CUI [1,1])
GENOTYPING_CENTER
Item
Name of the center which conducted genotyping
string
C1301943 (UMLS CUI [1,1])
C0565990 (UMLS CUI [1,2])
C1285573 (UMLS CUI [1,3])
C0565990 (UMLS CUI [1,2])
C1285573 (UMLS CUI [1,3])
SEQUENCING_CENTER
Item
Name of the center which conducted sequencing
string
C1301943 (UMLS CUI [1,1])
C0565990 (UMLS CUI [1,2])
C1561491 (UMLS CUI [1,3])
C0565990 (UMLS CUI [1,2])
C1561491 (UMLS CUI [1,3])
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