ID

45685

Beskrivning

Principal Investigator: Stephen S. Rich, PhD, Center for Public Health Genomics, University of Virginia, Charlottesville, VA, USA MeSH: Diabetes Mellitus, Type 1 https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs001222 The Type 1 Diabetes Genetics Consortium (T1DGC) was established to collect resources (biological samples and data) and conduct research to better understand the genetic basis of type 1 diabetes (T1D). Collection was initiated by ascertaining affected sib-pair families (both parents, two affected siblings and, when available, an unaffected sibling), collected from five geographic regions through four recruitment networks (Asia-Pacific, Europe, North America, United Kingdom). In addition, the T1DGC collected trio families (both parents and affected child) and cases and controls from low-prevalence populations (African-American, with four grandparents self-reporting as African ancestry; Mexican-American, with four grandparents self-reporting as ancestry from Mexico). The T1DGC also served as a repository for contributed collections from other studies, all meeting the broad data-sharing policy of the T1DGC, for inclusion in the genetic studies. These collections include T1D case samples ascertained from the UK Genetic Resource Investigating Diabetes (UK GRID) cohort, SEARCH for Diabetes in Youth (SEARCH), The Genetics of Kidneys in Diabetes (GoKinD), and control samples obtained from the British 1958 Birth Cohort, the UK National Blood Services collection, CLEAR (Consortium for the Longitudinal Evaluation of African-Americans with Early Rheumatoid Arthritis), the New York Cancer Project (NYCP), and other cohorts. For the NHGRI-funded Centers for Common Disease Genomics (CCDG) project, participants with T1D and ancestry-matched controls were identified through the T1DGC, either through direct ascertainment or by contribution from other sources to the T1DGC. As the CCDG has focused initially on non-Caucasian populations for whole genome sequencing, T1DGC participants of African, Mexican and Asian ancestry (targeting ~1200 cases and ~1200 controls in each ancestral group) and a small group of participants of Northern European ancestry (~100 cases, ~100 controls) were to be contributed to the study. Whole genome sequencing of T1DGC samples would be conducted at Washington University McDonnell Genome Institute and based upon matching case-control status within an ancestry group and prioritization by the CCDG.

Länk

dbGaP study = phs001222

Nyckelord

  1. 2023-05-02 2023-05-02 - Simon Heim
Rättsinnehavare

Stephen S. Rich, PhD, Center for Public Health Genomics, University of Virginia, Charlottesville, VA, USA

Uppladdad den

2 maj 2023

DOI

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Licens

Creative Commons BY 4.0

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dbGaP phs001222 CCDG - Whole Genome Sequencing in Type 1 Diabetes (T1DGC)

This sample attributes table includes body site from which sample was collected, sample analyte type, histological type, and tumor status.

pht005910
Beskrivning

pht005910

Alias
UMLS CUI [1,1]
C3846158
Sample ID
Beskrivning

SAMPID

Datatyp

string

Alias
UMLS CUI [1,1]
C1299222
Body site from which sample was collected
Beskrivning

BODY_SITE

Datatyp

string

Alias
UMLS CUI [1,1]
C1515974
UMLS CUI [1,2]
C0200345
Sample nucleic acid type
Beskrivning

ANALYTE_TYPE

Datatyp

string

Alias
UMLS CUI [1,1]
C5419066
Type of sample
Beskrivning

HISTOLOGICAL_TYPE

Datatyp

string

Alias
UMLS CUI [1,1]
C0456204
Tumor status of the sample
Beskrivning

IS_TUMOR

Datatyp

string

Alias
UMLS CUI [1,1]
C0475752

Similar models

This sample attributes table includes body site from which sample was collected, sample analyte type, histological type, and tumor status.

Name
Typ
Description | Question | Decode (Coded Value)
Datatyp
Alias
Item Group
pht005910
C3846158 (UMLS CUI [1,1])
SAMPID
Item
Sample ID
string
C1299222 (UMLS CUI [1,1])
BODY_SITE
Item
Body site from which sample was collected
string
C1515974 (UMLS CUI [1,1])
C0200345 (UMLS CUI [1,2])
ANALYTE_TYPE
Item
Sample nucleic acid type
string
C5419066 (UMLS CUI [1,1])
HISTOLOGICAL_TYPE
Item
Type of sample
string
C0456204 (UMLS CUI [1,1])
IS_TUMOR
Item
Tumor status of the sample
string
C0475752 (UMLS CUI [1,1])

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