ID

45685

Descripción

Principal Investigator: Stephen S. Rich, PhD, Center for Public Health Genomics, University of Virginia, Charlottesville, VA, USA MeSH: Diabetes Mellitus, Type 1 https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs001222 The Type 1 Diabetes Genetics Consortium (T1DGC) was established to collect resources (biological samples and data) and conduct research to better understand the genetic basis of type 1 diabetes (T1D). Collection was initiated by ascertaining affected sib-pair families (both parents, two affected siblings and, when available, an unaffected sibling), collected from five geographic regions through four recruitment networks (Asia-Pacific, Europe, North America, United Kingdom). In addition, the T1DGC collected trio families (both parents and affected child) and cases and controls from low-prevalence populations (African-American, with four grandparents self-reporting as African ancestry; Mexican-American, with four grandparents self-reporting as ancestry from Mexico). The T1DGC also served as a repository for contributed collections from other studies, all meeting the broad data-sharing policy of the T1DGC, for inclusion in the genetic studies. These collections include T1D case samples ascertained from the UK Genetic Resource Investigating Diabetes (UK GRID) cohort, SEARCH for Diabetes in Youth (SEARCH), The Genetics of Kidneys in Diabetes (GoKinD), and control samples obtained from the British 1958 Birth Cohort, the UK National Blood Services collection, CLEAR (Consortium for the Longitudinal Evaluation of African-Americans with Early Rheumatoid Arthritis), the New York Cancer Project (NYCP), and other cohorts. For the NHGRI-funded Centers for Common Disease Genomics (CCDG) project, participants with T1D and ancestry-matched controls were identified through the T1DGC, either through direct ascertainment or by contribution from other sources to the T1DGC. As the CCDG has focused initially on non-Caucasian populations for whole genome sequencing, T1DGC participants of African, Mexican and Asian ancestry (targeting ~1200 cases and ~1200 controls in each ancestral group) and a small group of participants of Northern European ancestry (~100 cases, ~100 controls) were to be contributed to the study. Whole genome sequencing of T1DGC samples would be conducted at Washington University McDonnell Genome Institute and based upon matching case-control status within an ancestry group and prioritization by the CCDG.

Link

dbGaP study = phs001222

Palabras clave

  1. 2/5/23 2/5/23 - Simon Heim
Titular de derechos de autor

Stephen S. Rich, PhD, Center for Public Health Genomics, University of Virginia, Charlottesville, VA, USA

Subido en

2 de mayo de 2023

DOI

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Licencia

Creative Commons BY 4.0

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    dbGaP phs001222 CCDG - Whole Genome Sequencing in Type 1 Diabetes (T1DGC)

    The subject consent data table contains subject IDs, consent group information, and affection status for type 1 diabetes (T1D).

    pht005907
    Descripción

    pht005907

    Alias
    UMLS CUI [1,1]
    C3846158
    De-identified subject ID
    Descripción

    SUBJID

    Tipo de datos

    string

    Alias
    UMLS CUI [1,1]
    C4684638
    UMLS CUI [1,2]
    C2348585
    Allowable research use
    Descripción

    CONSENT

    Tipo de datos

    text

    Alias
    UMLS CUI [1,1]
    C0042153
    UMLS CUI [1,2]
    C0035168
    Has subject been diagnosed with type 1 diabetes (T1D)
    Descripción

    AFFECTION_STATUS

    Tipo de datos

    boolean

    Alias
    UMLS CUI [1,1]
    C0011854

    Similar models

    The subject consent data table contains subject IDs, consent group information, and affection status for type 1 diabetes (T1D).

    Name
    Tipo
    Description | Question | Decode (Coded Value)
    Tipo de datos
    Alias
    Item Group
    pht005907
    C3846158 (UMLS CUI [1,1])
    SUBJID
    Item
    De-identified subject ID
    string
    C4684638 (UMLS CUI [1,1])
    C2348585 (UMLS CUI [1,2])
    Item
    Allowable research use
    text
    C0042153 (UMLS CUI [1,1])
    C0035168 (UMLS CUI [1,2])
    Code List
    Allowable research use
    CL Item
    Disease-Specific (Diabetes and Related Complications, IRB, NPU) (DS-DRC-IRB-NPU) (1)
    AFFECTION_STATUS
    Item
    Has subject been diagnosed with type 1 diabetes (T1D)
    boolean
    C0011854 (UMLS CUI [1,1])

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